Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ZCF125.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59540 885 / 0 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G10180 448 / 2e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G21380 292 / 2e-84 Kinesin motor family protein (.1) AT3G12020 286 / 5e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G39050 287 / 1e-82 Kinesin motor family protein (.1) AT3G43210 283 / 4e-82 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT3G51150 278 / 2e-79 ATP binding microtubule motor family protein (.1.2) AT1G21730 273 / 1e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G06670 274 / 2e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G66310 275 / 3e-78 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040700 [exp] 453 / 3e-142 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G136600 [exp] 305 / 8e-90 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.004G161100 [exp] 304 / 1e-88 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.009G122100 [exp] 300 / 4e-87 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.016G060400 [exp] 286 / 1e-82 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G027600 [exp] 284 / 2e-82 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G194900 [exp] 281 / 8e-81 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G044600 [exp] 280 / 8e-81 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.007G014800 [exp] 278 / 6e-80 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018661 [exp] 984 / 0 AT1G59540 924 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10007725 [exp] 981 / 0 AT1G59540 906 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010441 [exp] 444 / 1e-139 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 445 / 6e-139 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005181 [exp] 295 / 2e-86 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10041958 [exp] 295 / 5e-86 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017969 [exp] 295 / 2e-85 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10015448 [exp] 280 / 6e-85 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10032452 [exp] 284 / 4e-82 AT1G18370 1452 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10035471 [exp] 281 / 2e-81 AT2G21300 1011 / 0.0 ATP binding microtubule motor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.014G013300.2 pacid=42763298 polypeptide=Potri.014G013300.2.p locus=Potri.014G013300 ID=Potri.014G013300.2.v4.1 annot-version=v4.1 ATGGAGAAGATCTGTGTAGCAATTAGAGTGAGACCACCTGTCATTGTATCTGAAGACACCACCATCAATGGAACCTACTGGAAAGTGGAAGAAAATCGCA TCTCTCTTCACAAATCTCACGGCTCTCCTATCTCCGGCGTCTCTTATGCCTTTGATCACGTGTTCGATGAGAGCTGCACAAACTCTAGAGTTTACGAGCT CCTTACCAAGGATCTCATTCTTGCTGCTGTTGACGGTTTTAACGGAACGGTGTTCGCTTATGGACAGACTAGCAGTGGAAAGACGTTTACGATGAACGGT TCTCAAAACGATGGAGGAATTATTCATCGAGCTGTTAAAGATATTTTTGAAAAAATTCACATGATTTCCGAGAGAGAGTTTCTCATAAGAGTTTCGTATA TGGAAATTTATAATGAGGAGATTAATGATCTTTTTGCTGTTGAGAATCAGAAATTGCCAATACATGAGAGCTTGGAGCGCGGCGTGTTTGTTGCAGGACT AAAGGAGGAAATTGTGAGTAATGGTGAACAAGTGTTGAAGTTAATCGAAGGAGGAGAAGTTAATCGACACTTTGGAGAGACGAACATGAATGCTCGAAGC AGTAGGTCTCACACGATTTTTAGAATGGTGATTGAAAGTAAGAGGAAGGATGCCAATTCTTCTAGTGATTATTCGAGTAGTGATGCTGTCCGAGTTTCTG TGTTGAACTTGGTAGATTTAGCTGGATCAGAAAGGATAGCTAAAACTGGTGCTGGTGGTGTACGTTTAAAAGAAGGGAAGTATATTAACAAGAGTTTGAT GATTCTTGGTAATGTAATAAACAAACTAAGTGAAGGTGCCAAGCAGAGGGGGCACATTCCTTATCGTGATAGCAAGCTTACTCGTATACTTCAACCTGCT CTTGGTGGAAATGCCAAGACTTCAATTATATGCACTGTAGCCCCAGAAGAGCTTCACATTGAGGAAACAAAGGGAACTCTCCAGTTTGCTAGTCGAGCTA AGCGCATCACCAATTGTGCCCAAGTGAATGAGATTTTGTCAGATGCAGCCTTGCTGAAGCGGCAGAAGTTAGAGATAGAGGAGCTGCGTAAGAAACTTCA GGGATCCCGGGCTGAAGTACTGGAGCAAGAAATTTTGAAGTTGAGAAATGATATGCTGAAGTACGAATTGGAGAGAGAAAAGCTTGAGATGGAACTGAAA GAGGAGAGGAAATCACACAAGGAACGTGATCAATGCATCAAAGAGCAGCAGATGAAAATTGACAATCTCAGTACCAGTGCCTCCTTTTCAGATAGTGATA GGAACTCTATCCAGGAACAGAATGCTGGGAGACAAATCCTCAAGGAAGAATTCAGTGGCAGCAACAGTGTCTTCAAAAATGATGTTTTCAGAACCCCTAC ATTAAAGGCAGATTCCAATGCCTTTGTTGGCAAACGGTCCAATTACTCCAGGCTGCCAGATTTCAGTCCTCTACCAGATAACTATAGCAATGTGGCCGAT GAAGACACATGGTTGAAAATGAACAAAGGATTCATCGCTGACCTTGATTCAATTCAAATGACTCCTGCGAGAAAAGTTCAATCCTTTCCTTTTGGTGATG TTACTCTAGGTTCTTCAACTGAGGATTACAAAGTAGAGGTCCAGAATCTCAAAAGGCAACTAGAACTTGTCCTTGAAGAGAAGAATGAACTCGAGAAGAA GCACTTAGAACAATTACAGTTGAATGATCATTTAATGGGGGAGATATCAGAACTCAAACATGAAGCAGTGGTAATTCGAGAAATACCTCAAAGACTATGT GAATCTATGGCTAGTTGCAGAGACACTTACAAAGATGTTCTGTTAACGTTGCAGAGTTTTGTACCTGATGGAGACTCTTCAATTGGAAAATTCCTATCTA CCACAAGTGAAATTGGCTTAACCCTTTTCTCAAATTTGGAAAAGCGTTTCTCTATGGCAATGGATGATCACAAATCTTTTAATGAGAATGATTCTCTGGT CCAAGAAAACTGCGAAGTGCTTTCTGAAAGATTGAAAAGCACAATTACATCCCTGGCATTAGCAGAAAAACTAGCTGTTCAGAATAAAGAAGAGAAGAAT CCAATATGCGGCTCCACATATAAGGAATGCACTCTGGGAGAAGAACCTGCTTCTTGGAAGGAGAAACTGGGCAGTGAACTTGGTGCTATCAAGGAAAAAC TCCAAGCCTTGGAGAAAGAGTTAGAACATAATAACCAGCTTCTGAAGGATTCAAGAGAAAGACATGATACCATGGAAAGAGATTATTGGCTTTTGAAAGA AGAAAGAGATTCTTTGCTTGAAAAGGTCTCCGAGTCATCTCAAAACCTAGCAGCGGTTGCCCTTCAAAAGGAAAACATTTTGAAGGATTTGAACATTGAA GCAGAGAGAAGGAAATATCTCGAGAAAGAGATCAAACAATTCAGTGTTGCTTTTGCCAGTCGGCAGAGATCCTTCATGTCTTTCCAAGGTGAATTTCTAT CTAAAGTTGAGAAATTGAGAGCCCAAAGTCCAATTGCAGCATCCGAATCTCTTGGGTGTTGA
AA sequence Show only first row Show all	>Potri.014G013300.2 pacid=42763298 polypeptide=Potri.014G013300.2.p locus=Potri.014G013300 ID=Potri.014G013300.2.v4.1 annot-version=v4.1 MEKICVAIRVRPPVIVSEDTTINGTYWKVEENRISLHKSHGSPISGVSYAFDHVFDESCTNSRVYELLTKDLILAAVDGFNGTVFAYGQTSSGKTFTMNG SQNDGGIIHRAVKDIFEKIHMISEREFLIRVSYMEIYNEEINDLFAVENQKLPIHESLERGVFVAGLKEEIVSNGEQVLKLIEGGEVNRHFGETNMNARS SRSHTIFRMVIESKRKDANSSSDYSSSDAVRVSVLNLVDLAGSERIAKTGAGGVRLKEGKYINKSLMILGNVINKLSEGAKQRGHIPYRDSKLTRILQPA LGGNAKTSIICTVAPEELHIEETKGTLQFASRAKRITNCAQVNEILSDAALLKRQKLEIEELRKKLQGSRAEVLEQEILKLRNDMLKYELEREKLEMELK EERKSHKERDQCIKEQQMKIDNLSTSASFSDSDRNSIQEQNAGRQILKEEFSGSNSVFKNDVFRTPTLKADSNAFVGKRSNYSRLPDFSPLPDNYSNVAD EDTWLKMNKGFIADLDSIQMTPARKVQSFPFGDVTLGSSTEDYKVEVQNLKRQLELVLEEKNELEKKHLEQLQLNDHLMGEISELKHEAVVIREIPQRLC ESMASCRDTYKDVLLTLQSFVPDGDSSIGKFLSTTSEIGLTLFSNLEKRFSMAMDDHKSFNENDSLVQENCEVLSERLKSTITSLALAEKLAVQNKEEKN PICGSTYKECTLGEEPASWKEKLGSELGAIKEKLQALEKELEHNNQLLKDSRERHDTMERDYWLLKEERDSLLEKVSESSQNLAAVALQKENILKDLNIE AERRKYLEKEIKQFSVAFASRQRSFMSFQGEFLSKVEKLRAQSPIAASESLGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59540		ZCF125	P-loop containing nucleoside t...		Potri.014G013300 [exp]	0	1	Pt-ZCF125.1
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Potri.002G003400 [exp]	13.78	0.8321	CDKB2.1
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.007G076700 [exp]	16.24	0.8291
AT3G08943			ARM repeat superfamily protein...		Potri.006G103300 [exp]	17.54	0.8310
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Potri.006G113200 [exp]	28.07	0.8270
AT5G59970			Histone superfamily protein (....		Potri.007G012500 [exp]	29.34	0.7809
AT2G36200			P-loop containing nucleoside t...		Potri.016G077800 [exp]	42.21	0.8133
AT4G21820			binding;calmodulin binding (.1...		Potri.004G017500 [exp]	43.95	0.8100
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	50.95	0.8041
AT1G16330		CYCB3;1	cyclin b3;1 (.1)		Potri.008G083200 [exp]	52.30	0.8012
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	53.47	0.7982

Compare expression of checked genes

Potri.014G013300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.