Plant FIBer expression Database

CW7.2 (Potri.014G013500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CW7.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G59520 505 / 8e-180 CW7 CW7 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012485
[exp]
490 / 1e-173 AT1G59520 452 / 7e-159 CW7 (.1.2.3)
Lus10003786
[exp]
500 / 3e-173 AT1G59520 463 / 9e-159 CW7 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09741 DUF2045 Uncharacterized conserved protein (DUF2045)
Representative CDS sequence
>Potri.014G013500.1 pacid=42764180 polypeptide=Potri.014G013500.1.p locus=Potri.014G013500 ID=Potri.014G013500.1.v4.1 annot-version=v4.1
ATGCTAGGGGATGGCGGAGAGACTCCTTCCAGGTCTGAGTTGTTGTCTATGGTGAAGAAACACTCTAAGTTGTTAGGGAAAACTACAGTGGAAGAGGAAG
ATGCAGCAGATGTTGAAATGGACTCGCGGTTTTGGCATGATGTGTTGGATTTGTATTTTATTCGTGGTAAAGAATCAAGGAGAAAGCAGGATGATGATCT
CGTCTTTTTCGTTAGAAAAAGGAACACGCAAGGATATGGTTTCAATGATAGTGTAGAGAGTGCTGCTTCTTACTTTGTACGCAGGTGGGCACCTAAGTTG
GATAATTTAGTTAGTGAAAGTTCAGCGGAGGTGGATTGGAGGCGCTCGTTTTACTTGAACTTGATTGCACATACATCATACACAGTAACTGTGGCAATTT
GCAGTCAACAAGTCCTTCGGAATCATCAAGCTGGGCAAGATACACAGTTGTCTCCTATATATAAGGTTGTAAAGACTGTTTATGCATCTCCAAGTCGTGT
ATATTTTCATTTGGACTCAAAAAAGGAAGTAGAGACAACGCCTGCATATCCAGATATCTGTTTTGCAGTTGATGATTTTGACTCCACTTTTGATGCAGTG
GTATTGACAGAAAGTGACCACTGCTATTGTGTACTTCTCAATGCACATGATGGGGCAGCATTTCCTAGTGACAAAGAGTTGCAAGATGGCAGTTCTAGCA
GTAATTTTTGTCAGAAAAATGATACTAGTCCTGGGAAGGAAAAGAATTCTAAGCTCACACTTTTCTCTGGATTTGTAAGCTATCAAATGGTTCGAGAAGC
ATATGATGCTGGCAAGTCTCGATTTGGGAGTCTTCTTGGTCAATCCCCTGGAAAAACAGACAGACTTTACATGAAAGGTCCAGGAGGACGTGGGGAAGTT
GAAGTAGCTGTTTCTGGTGTTGCAGATCAAAGCCAGCAGGATGTTGGCCCTTTTTCACCTGTTACTTCAAAGAAAGGGTTTGGGATTGGCTCAGTTTTTC
TAAAAGCAGCATCTGTTGCATCTGTGGCAGCAAAGCATGCCTTTGCAGCTGCTTCTTCCTCCGTATCTTCAGATGACGAGATGTTACCCCTCAAATGCTG
CTTAATGTCCATATCATTGCCCTGGGAATATATCGCTTATGATCTTTTGTTCAAGGGAAGTCCTCCTGTGAACATGTAA
AA sequence
>Potri.014G013500.1 pacid=42764180 polypeptide=Potri.014G013500.1.p locus=Potri.014G013500 ID=Potri.014G013500.1.v4.1 annot-version=v4.1
MLGDGGETPSRSELLSMVKKHSKLLGKTTVEEEDAADVEMDSRFWHDVLDLYFIRGKESRRKQDDDLVFFVRKRNTQGYGFNDSVESAASYFVRRWAPKL
DNLVSESSAEVDWRRSFYLNLIAHTSYTVTVAICSQQVLRNHQAGQDTQLSPIYKVVKTVYASPSRVYFHLDSKKEVETTPAYPDICFAVDDFDSTFDAV
VLTESDHCYCVLLNAHDGAAFPSDKELQDGSSSSNFCQKNDTSPGKEKNSKLTLFSGFVSYQMVREAYDAGKSRFGSLLGQSPGKTDRLYMKGPGGRGEV
EVAVSGVADQSQQDVGPFSPVTSKKGFGIGSVFLKAASVASVAAKHAFAAASSSVSSDDEMLPLKCCLMSISLPWEYIAYDLLFKGSPPVNM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G59520 CW7 CW7 (.1.2.3) Potri.014G013500
[exp]
0 1 CW7.2
AT3G25910 Protein of unknown function (D... Potri.006G154300
[exp]
3.74 0.7674
AT3G05700 Drought-responsive family prot... Potri.014G125500
[exp]
18.24 0.7596
AT3G45640 ATMAPK3, ATMPK3 mitogen-activated protein kina... Potri.001G271700
[exp]
21.58 0.7612 MPK3.1
AT5G03415 E2F_DP ATDPB, DPB Transcription factor DP (.1.2) Potri.006G124200
[exp]
38.49 0.6728
AT1G27760 SAT32, ATSAT32 SALT-TOLERANCE 32, interferon-... Potri.014G016800
[exp]
40.60 0.7054
AT4G25500 ATRSP40, AT-SRP... ARABIDOPSIS THALIANA ARGININE/... Potri.012G133600
[exp]
43.26 0.6626
Potri.016G041301
[exp]
49.83 0.7162
AT3G16520 UGT88A1 UDP-glucosyl transferase 88A1 ... Potri.004G126000
[exp]
51.84 0.6923
AT3G02470 SAMDC S-adenosylmethionine decarboxy... Potri.004G106800
[exp]
53.94 0.6893 Pt-SAMDC.3
AT5G54470 CO B-box type zinc finger family ... Potri.001G414700
[exp]
62.56 0.6900

Potri.014G013500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.