Plant FIBer expression Database

Potri.014G013800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G049100
[exp]
50 / 2e-08 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G013800.11 pacid=42763333 polypeptide=Potri.014G013800.11.p locus=Potri.014G013800 ID=Potri.014G013800.11.v4.1 annot-version=v4.1
ATGGAAGGTACTTCATCTGAGCTTGTCGGAGGTGATCATAATGATCAAACTGTCCAACCGTCAGCTGAAGAAATTAGAAAAGAAAAGAGACGGCAAAGAG
ACAACAGACGTAAGAAGAGAGAGCAGCGAGAGATAGAACGCACTCAGAGAGAGTTGGAAAAGATGAAAGCAGATTATGCTAAGTTGGAGAAAAACCATGC
CTACTTAAGAGGAAAACTGGAACAGTTGGAACACGATGTGGAGCAAACTAGAGAAACTCGTAGGCGACTGGAGCAAATAGTTGAACAACAGAATATTATG
ATCAACATGCTTCAGATATTTACTTACTTTTGA
AA sequence
>Potri.014G013800.11 pacid=42763333 polypeptide=Potri.014G013800.11.p locus=Potri.014G013800 ID=Potri.014G013800.11.v4.1 annot-version=v4.1
MEGTSSELVGGDHNDQTVQPSAEEIRKEKRRQRDNRRKKREQREIERTQRELEKMKADYAKLEKNHAYLRGKLEQLEHDVEQTRETRRRLEQIVEQQNIM
INMLQIFTYF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G013800
[exp]
0 1
AT4G37240 unknown protein Potri.004G149600
[exp]
1.41 0.8692
AT5G28490 OBO2, LSH1 ORGAN BOUNDARY 2, LIGHT-DEPEND... Potri.009G157600
[exp]
3.46 0.8668
AT1G05805 bHLH bHLH128 basic helix-loop-helix (bHLH) ... Potri.002G231700
[exp]
3.60 0.8747
AT1G02090 ATCSN7, COP15, ... FUSCA 5, CONSTITUTIVE PHOTOMOR... Potri.002G137400
[exp]
7.14 0.7911
Potri.003G153266
[exp]
8.94 0.8371
AT3G20600 NDR1 non race-specific disease resi... Potri.001G418000
[exp]
9.48 0.8098
AT1G27170 transmembrane receptors;ATP bi... Potri.017G143566
[exp]
10.39 0.8516
AT5G48380 BIR1 BAK1-interacting receptor-like... Potri.017G007600
[exp]
14.07 0.8053
AT3G18370 NTMCTYPE3, ATSY... C2 domain-containing protein (... Potri.012G056000
[exp]
14.24 0.8401
AT5G53300 UBC10 ubiquitin-conjugating enzyme 1... Potri.004G175000
[exp]
19.59 0.8305 UBC.11

Potri.014G013800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.