Plant FIBer expression Database

Potri.014G014100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10150 402 / 1e-138 ATPP2-A10 Carbohydrate-binding protein (.1)
AT1G59510 365 / 2e-124 CF9 Carbohydrate-binding protein (.1)
AT3G49790 272 / 3e-88 Carbohydrate-binding protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G116400
[exp]
627 / 0 AT1G10150 387 / 1e-132 Carbohydrate-binding protein (.1)
Potri.007G006600
[exp]
392 / 4e-134 AT1G10150 355 / 8e-120 Carbohydrate-binding protein (.1)
Potri.014G006800
[exp]
349 / 1e-117 AT1G10150 350 / 5e-118 Carbohydrate-binding protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003785
[exp]
432 / 1e-150 AT1G10150 447 / 1e-156 Carbohydrate-binding protein (.1)
Lus10007727
[exp]
429 / 2e-149 AT1G10150 429 / 1e-149 Carbohydrate-binding protein (.1)
Lus10012487
[exp]
426 / 5e-148 AT1G10150 439 / 2e-153 Carbohydrate-binding protein (.1)
Lus10018663
[exp]
301 / 3e-100 AT1G10150 342 / 2e-116 Carbohydrate-binding protein (.1)
Lus10039651
[exp]
258 / 8e-83 AT1G10150 298 / 2e-98 Carbohydrate-binding protein (.1)
Lus10011718
[exp]
252 / 3e-80 AT1G10150 288 / 2e-94 Carbohydrate-binding protein (.1)
PFAM info
Representative CDS sequence
>Potri.014G014100.1 pacid=42762709 polypeptide=Potri.014G014100.1.p locus=Potri.014G014100 ID=Potri.014G014100.1.v4.1 annot-version=v4.1
ATGGATCTTGAATTGGTGAAAAGTGGTGTCCACTTTTCTAGGAGGAAAAAGAAATTGTTAATTCTACTTGCTGTTTTTGGTGTATCTGGCTATGGATTTT
ACAGGTTGTATAATTTGCCTGCTGTGGCAAGGAAAAGGAGGGGATTTATGAAACTAATGGGGGCTTTGATTTCTATTGCCGAAATGGTTTCTGATTCCAC
GGAGACCATTAGTATTGTCTCCAAGGATTTGAAGGAGTTTTTGCAATCTGATTCGGATAAGATTCCTAATAGTTTAAAGCAAATTTCCAAGATTGCGAAA
TCGGATGAGTTTTCTGAGTCTTTGATGAGGGTTACTCAGGCTTTGACCGTTGGAGTTTTGCGAGGGTATAATTTGGAGTCTGGAAATGGTAACACGGTAG
GGTTAGGTTCTGGGAATTTGAATTTTTCTGATAAGGTGATGGAGAGGTTGTTTTCCAATGAAGGAGCTGGGTTTGTTTCTGTTGTGGTTGGTAGTTTTGC
GAGGAATTTGGTTTTGGGGTTTTATTCGAGTGGTGGAGGTCAAATGGGGTCGAGTTTGTCAGATGTGCCTGGATGGGTTGGTGTGGTTTGTGATGATCGG
TGTAGGGAGCTCATTGCTGATTGCATACAGAAGTTTGTGAGCTCGGCGGTTTCTGTTTATCTGGATAAGACGTTGAAGATCAATTCTTATGATGAACTTT
TCACTGGCTTGACAAATCCAAAGCATCAAAACAATGTGAAGGACGTTTTGATTTCTCTCTGTAATGGTGCTGTGGAAACGCTTGTGAAAACATCTCACCA
AGTGTTGACCACAAGTTCGAGTGAAAAATCGGGTTCTACTTGTTCAATTGTCGAACAGGGTGAAGTGCTGAGTGCGACAAAAGATGGGTTTCTCAATCGA
GAAGCATGTATGAAAGACGGAAACTTTTTTGATGGGGTTCAGAGTGATGGATGGGTTGGAAAGGTTTCATCTACTTTGTCAGTGCCAAGTAATAGGAAAT
TTGTGTTTGATGTGACTGGGAGGGTGACGTTTGAAACGATAAGGTGTATTGTGGAATTCATGCTGTGGAAGATGTCAGATGGGGTGAAGAGAAGTCTCAA
TGTGGTTCAGGAAGAGATAGTAGACAGGGGACTCGAAGTAGTCAGATATGTTGGGGCTAAGTCCTCTGTTATTGTTACTGTATGCCTTGCCTTGTATTTA
CATGTTCTGGGTGGCACTAGGGTTCTCTTACCTGCTTAA
AA sequence
>Potri.014G014100.1 pacid=42762709 polypeptide=Potri.014G014100.1.p locus=Potri.014G014100 ID=Potri.014G014100.1.v4.1 annot-version=v4.1
MDLELVKSGVHFSRRKKKLLILLAVFGVSGYGFYRLYNLPAVARKRRGFMKLMGALISIAEMVSDSTETISIVSKDLKEFLQSDSDKIPNSLKQISKIAK
SDEFSESLMRVTQALTVGVLRGYNLESGNGNTVGLGSGNLNFSDKVMERLFSNEGAGFVSVVVGSFARNLVLGFYSSGGGQMGSSLSDVPGWVGVVCDDR
CRELIADCIQKFVSSAVSVYLDKTLKINSYDELFTGLTNPKHQNNVKDVLISLCNGAVETLVKTSHQVLTTSSSEKSGSTCSIVEQGEVLSATKDGFLNR
EACMKDGNFFDGVQSDGWVGKVSSTLSVPSNRKFVFDVTGRVTFETIRCIVEFMLWKMSDGVKRSLNVVQEEIVDRGLEVVRYVGAKSSVIVTVCLALYL
HVLGGTRVLLPA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G10150 ATPP2-A10 Carbohydrate-binding protein (... Potri.014G014100
[exp]
0 1
AT5G08240 unknown protein Potri.007G071900
[exp]
4.00 0.8567
AT3G60380 unknown protein Potri.002G136600
[exp]
4.58 0.8379
AT1G16670 Protein kinase superfamily pro... Potri.011G142100
[exp]
4.69 0.8609
Potri.001G078300
[exp]
8.24 0.8542
AT2G17480 ATMLO8, MLO8 MILDEW RESISTANCE LOCUS O 8, S... Potri.007G064300
[exp]
11.22 0.8313 Pt-MLO8.2
AT3G14690 CYP72A15 "cytochrome P450, family 72, s... Potri.011G101401
[exp]
11.40 0.8189
AT1G64280 SAI1, NIM1, NPR... SALICYLIC ACID INSENSITIVE 1, ... Potri.006G148100
[exp]
12.00 0.8438 NPR1.1
AT1G74790 catalytics (.1) Potri.015G067200
[exp]
14.14 0.8452
AT1G34060 Pyridoxal phosphate (PLP)-depe... Potri.002G064000
[exp]
14.83 0.8293 ATMEPCT.1
AT3G14690 CYP72A15 "cytochrome P450, family 72, s... Potri.011G101500
[exp]
15.19 0.8213

Potri.014G014100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.