Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49810 553 / 0 ARM repeat superfamily protein (.1) AT5G65920 536 / 0 ARM repeat superfamily protein (.1) AT3G19380 151 / 5e-41 PUB25 plant U-box 25 (.1) AT1G49780 134 / 1e-34 PUB26 plant U-box 26 (.1) AT2G35930 129 / 4e-33 PUB23 plant U-box 23 (.1) AT3G18710 127 / 2e-32 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT5G64660 122 / 1e-30 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G46510 117 / 3e-28 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 116 / 7e-28 ATPUB14 plant U-box 14 (.1) AT1G66160 107 / 2e-25 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G116500 [exp] 739 / 0 AT3G49810 556 / 0.0 ARM repeat superfamily protein (.1) Potri.002G116600 [exp] 701 / 0 AT3G49810 546 / 0.0 ARM repeat superfamily protein (.1) Potri.006G277700 [exp] 694 / 0 AT3G49810 498 / 3e-175 ARM repeat superfamily protein (.1) Potri.009G100200 [exp] 142 / 1e-37 AT1G49780 515 / 0.0 plant U-box 26 (.1) Potri.004G140100 [exp] 140 / 3e-37 AT1G49780 517 / 0.0 plant U-box 26 (.1) Potri.016G069400 [exp] 128 / 8e-33 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 125 / 1e-31 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.007G110600 [exp] 124 / 2e-31 AT5G09800 398 / 6e-137 ARM repeat superfamily protein (.1) Potri.008G035700 [exp] 125 / 8e-31 AT3G54850 821 / 0.0 plant U-box 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010598 [exp] 567 / 0 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10012491 [exp] 178 / 1e-52 AT5G65920 180 / 1e-53 ARM repeat superfamily protein (.1) Lus10005500 [exp] 128 / 1e-35 AT5G65920 135 / 3e-39 ARM repeat superfamily protein (.1) Lus10012260 [exp] 127 / 2e-31 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 127 / 2e-31 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10043471 [exp] 126 / 4e-31 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 125 / 2e-30 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10042798 [exp] 119 / 3e-29 AT3G18710 275 / 9e-89 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10029771 [exp] 118 / 5e-29 AT3G18710 259 / 1e-82 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10037970 [exp] 120 / 6e-29 AT3G54850 803 / 0.0 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.014G014300.1 pacid=42764567 polypeptide=Potri.014G014300.1.p locus=Potri.014G014300 ID=Potri.014G014300.1.v4.1 annot-version=v4.1 ATGCCGATGTATAAGCCAAATAGCTATAGAAATGTAAAGCTAGATGTGGGCGTTGGAGGGCAAGTTCTAGATCTAGAAACCGCCGTTAAGGATGGCGTTT TGGACGGTGTTGGCGGTGGTGTTTTAGTTAGTGCTGGTGTGGCGGAGAAATTGGATCTGAAGAAGATGATTGAAGAGCTTGAATCAATAGAAGTACCGTC AGTGTTTATATGTCCAATTTCGCTGGACCCAATGGAAGACCCGGTGACGCTTTGCACAGGACAGACTTACGAGAGATCCAACATTCTCAAATGGTTCTCT CTAGGTCATTGCACGTGCCCCACTACAATGCAAGAGCTCTGGGATGATACGGTGACGCCGAACAGGACTATGCAGCATCTGATTTATAGCTGGTTCTCGC AGAAGTTCTTGGTTATGAAGAAGAGATCAGAGGATGTGCAAGGAAGGGCTATTGAGCTTCTGGAAAATCTGAAGAAAGTTAAGGGTCAAGCTAGAGTGCA AACTTTGAAGGAACTGAGGCAGGTTGTTGCCGCACATTCTACGGCACGGAAGGCTGTGCTGGATAATGGTGGGACTGCCTTGGTGTCTTCTTTATTGGGC CCCTTTACCACTCATGCCGTTGGGTCCGAAGCAGTTGGAATTCTCGTGAATTTGGATATTGATTTTGCATCCAAGTCGAATTTGAGGCAACCTGCGAAGA TTTCTTTAATGGTGGATATGTTGAATGAGGGTTCTATCGAGACCAAGATCAATGTTACCCGATTAATAGAAATGTTGATGGAAGGGAGTGATTTTGAGAA TGAAAACTTGTCAAGCCTGAGTCTTTTAGTTGGTCTGTTGAGGTTGGTGAAAGACAAAAGGCACCCAAATGGGTTATTGGCTGGACTTGGTTTGTTAAAG AGTATTTGTTCACATGAATCAGTTAGGGGCTCAGTTGTGAGCATTGGGACAGTTCCTCCATTGGTGGAACTTTTGCCAAGTTTGAATAGTGAGTGCTTGG AATTAGCACTTTATATTCTGGAGGTTCTTTCAAGTATTCCCGAGGGAAGATTGGCTCTGAAGGGTTGTGCCAGCACAATACCGAATGTGGTCAAGTTGTT GATGAGGGTTTCGGAGGCTTGCATGCAGCTTGCATTGTCAATATTATGGGCTGTTTGCATGCTCGCACCAGAAGAATGCACTGCACTCGCTGTGGAGGCG GGTTTGGCAGCCAAACTACTACTTGTAATACAGAGCGGTTGCAATCCTGAGTTGAAGCAGCAGTCGGTTGAACTATTGAAATTGTGTAGTCTAAATTACA CATCAACCATTGTCATTTCAGAGTGTAAGCTTACGAGAACAATACAGTGA
AA sequence Show only first row Show all	>Potri.014G014300.1 pacid=42764567 polypeptide=Potri.014G014300.1.p locus=Potri.014G014300 ID=Potri.014G014300.1.v4.1 annot-version=v4.1 MPMYKPNSYRNVKLDVGVGGQVLDLETAVKDGVLDGVGGGVLVSAGVAEKLDLKKMIEELESIEVPSVFICPISLDPMEDPVTLCTGQTYERSNILKWFS LGHCTCPTTMQELWDDTVTPNRTMQHLIYSWFSQKFLVMKKRSEDVQGRAIELLENLKKVKGQARVQTLKELRQVVAAHSTARKAVLDNGGTALVSSLLG PFTTHAVGSEAVGILVNLDIDFASKSNLRQPAKISLMVDMLNEGSIETKINVTRLIEMLMEGSDFENENLSSLSLLVGLLRLVKDKRHPNGLLAGLGLLK SICSHESVRGSVVSIGTVPPLVELLPSLNSECLELALYILEVLSSIPEGRLALKGCASTIPNVVKLLMRVSEACMQLALSILWAVCMLAPEECTALAVEA GLAAKLLLVIQSGCNPELKQQSVELLKLCSLNYTSTIVISECKLTRTIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49810			ARM repeat superfamily protein...		Potri.014G014300 [exp]	0	1
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.004G015100 [exp]	1.41	0.9417
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	2.00	0.9461	Pt-VHA1.1
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Potri.003G205100 [exp]	2.23	0.9337
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Potri.006G098700 [exp]	2.44	0.9329
AT1G76770			HSP20-like chaperones superfam...		Potri.005G192700 [exp]	2.82	0.9348
AT5G45540			Protein of unknown function (D...		Potri.007G123100 [exp]	3.00	0.9274
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.004G082400 [exp]	4.47	0.9268
AT5G20670			Protein of unknown function (D...		Potri.012G042000 [exp]	4.47	0.9131
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.006G114200 [exp]	5.29	0.9300
AT3G49810			ARM repeat superfamily protein...		Potri.002G116600 [exp]	6.48	0.8939

Compare expression of checked genes

Potri.014G014300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.