Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58420 82 / 9e-20 Uncharacterised conserved protein UCP031279 (.1) AT1G10140 79 / 6e-19 Uncharacterised conserved protein UCP031279 (.1) AT4G37700 40 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G014600 [exp] 213 / 9e-72 AT1G58420 87 / 4e-22 Uncharacterised conserved protein UCP031279 (.1) Potri.002G117100 [exp] 179 / 4e-58 AT1G58420 84 / 1e-20 Uncharacterised conserved protein UCP031279 (.1) Potri.014G006300 [exp] 70 / 2e-15 AT1G58420 56 / 3e-10 Uncharacterised conserved protein UCP031279 (.1) Potri.007G006100 [exp] 69 / 6e-15 AT1G58420 68 / 1e-14 Uncharacterised conserved protein UCP031279 (.1) Potri.009G086000 [exp] 57 / 9e-11 ND / Potri.001G290400 [exp] 50 / 4e-08 ND / Potri.009G085900 [exp] 42 / 5e-05 ND / Potri.001G290300 [exp] 40 / 0.0002 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018665 [exp] 97 / 1e-25 AT1G10140 89 / 2e-22 Uncharacterised conserved protein UCP031279 (.1) Lus10007729 [exp] 95 / 8e-25 AT1G10140 82 / 1e-19 Uncharacterised conserved protein UCP031279 (.1) Lus10012496 [exp] 87 / 1e-21 AT1G58420 86 / 4e-21 Uncharacterised conserved protein UCP031279 (.1) Lus10025207 [exp] 49 / 2e-07 AT4G37700 56 / 4e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G014500.1 pacid=42763680 polypeptide=Potri.014G014500.1.p locus=Potri.014G014500 ID=Potri.014G014500.1.v4.1 annot-version=v4.1 ATGAAGACAAAAGCACACAACCAAAGCAAGTTCATGCGAGTCATTACAATCCCATTAAGAGTTTTGTGCAAGGCAAGGGATGTTTATGTTAAGAGCATGA CAGATTGCTCGATGGGGATGAGGTATGGCCCTTCTATAGTCTCGCGAGCAGGACAACACCCTCCCTTGCCCAGGAGTTTCAGTGTTAGCTCATCAAGGTC TGATCATGACGGTGAAGATTACAGAGAGCTTGTTAGAGCTGCTTCTGCCAGGAGCTTAGGTCACAGCAATGAAATTGAGATGTACATGCAGCTATTGAGG CAGCAGCAATCATCGATGATGACGGGGTCCAAAAAGGTGTTGCCAAAGAGTTGCAGTGTTGGAATGGGATTCATGGGCAAGATTGACGAGGAAAAACCAT GTGTTTTTGAAGCAGGTGCTGTTGATGTAAAGCCACAGTTGGGTCCAAGAAGCAGTAGCTGTGCTGTTGGAAAAGGAAGGGTTGCCTTCTGA
AA sequence Show only first row Show all	>Potri.014G014500.1 pacid=42763680 polypeptide=Potri.014G014500.1.p locus=Potri.014G014500 ID=Potri.014G014500.1.v4.1 annot-version=v4.1 MKTKAHNQSKFMRVITIPLRVLCKARDVYVKSMTDCSMGMRYGPSIVSRAGQHPPLPRSFSVSSSRSDHDGEDYRELVRAASARSLGHSNEIEMYMQLLR QQQSSMMTGSKKVLPKSCSVGMGFMGKIDEEKPCVFEAGAVDVKPQLGPRSSSCAVGKGRVAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58420			Uncharacterised conserved prot...		Potri.014G014500 [exp]	0	1
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.006G058600 [exp]	7.74	0.9691	Pt-PGIP.4
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G058800 [exp]	10.63	0.9762
AT5G25320			ACT-like superfamily protein (...		Potri.018G025500 [exp]	11.66	0.9631
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.008G149201 [exp]	13.96	0.9627
					Potri.001G194100 [exp]	17.37	0.9709
AT5G13330	AP2_ERF	RAP2.6L	related to AP2 6l (.1)		Potri.001G067600 [exp]	17.94	0.9511
AT5G05840			Protein of unknown function (D...		Potri.010G195200 [exp]	21.90	0.9703
AT5G14780		FDH	formate dehydrogenase (.1)		Potri.014G161300 [exp]	25.05	0.9519	FDH1
AT1G28190			unknown protein		Potri.001G070700 [exp]	26.38	0.9697
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.001G225800 [exp]	29.06	0.9691

Compare expression of checked genes

Potri.014G014500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.