Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ECA3.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10130 1660 / 0 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) AT1G07670 781 / 0 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT1G07810 775 / 0 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1) AT4G00900 760 / 0 ATECA2, ECA2 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) AT3G57330 298 / 7e-86 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G41560 293 / 5e-84 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT5G57110 286 / 2e-81 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT3G22910 281 / 1e-79 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT4G37640 275 / 1e-77 ACA2 calcium ATPase 2 (.1) AT4G29900 274 / 4e-77 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G117400 [exp] 1838 / 0 AT1G10130 1648 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.009G025700 [exp] 768 / 0 AT1G07670 1743 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.001G233400 [exp] 763 / 0 AT1G07670 1800 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.014G101900 [exp] 743 / 0 AT4G00900 1698 / 0.0 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) Potri.013G040201 [exp] 300 / 2e-86 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.016G043100 [exp] 298 / 1e-85 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.010G081100 [exp] 285 / 4e-81 AT3G22910 1337 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G046500 [exp] 285 / 6e-81 AT3G57330 1451 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Potri.007G055500 [exp] 281 / 5e-80 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007734 [exp] 1650 / 0 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10018668 [exp] 1565 / 0 AT1G10130 1524 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10042843 [exp] 764 / 0 AT1G07670 1799 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10028139 [exp] 762 / 0 AT1G07670 1798 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10023328 [exp] 702 / 0 AT1G07670 1549 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10038484 [exp] 523 / 4e-172 AT1G07670 816 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10035439 [exp] 271 / 6e-76 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10001638 [exp] 271 / 7e-76 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10018687 [exp] 270 / 7e-76 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10001428 [exp] 267 / 1e-74 AT4G29900 1593 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00689 [poplar] [flax] Cation_ATPase_C Cation transporting ATPase, C-terminus PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF13246 [poplar] [flax] Cation_ATPase Cation transport ATPase (P-type)
Representative CDS sequence Show only first row Show all	>Potri.014G014700.2 pacid=42764587 polypeptide=Potri.014G014700.2.p locus=Potri.014G014700 ID=Potri.014G014700.2.v4.1 annot-version=v4.1 ATGGAAGACGCGTACGCTAGATCCATCACCGAGGTTTTGGATTTTTTCGGGGTTGACCCTGGAAAGGGGCTCAGCGATTCTCAGGTGGCGCTACATTCAA AAATTTATGGTAAAAACGTGCTGCCTGAAGAGACAAGAACTCCCTTTTGGAAATTGGTTCTAAAACAGTTTGATGATTTGCTTGTTAAAATATTGATTGC TGCTGCTGCTGTTTCTCTCGTTTTGGCTTTGATTAATGGGGAAACAGGCCTGGCAGCTTTTCTGGAGCCTTTTGTCATCCTGTTGATTTTGGCTGCAAAT GCAGCTGTAGGTGTAATTACAGAAACAAATGCTGAGAAGGCTCTTGAGGAATTACGTGCCTATCAAGCTGATATTGCTACTGTGCTGCGAAATGGTTGTT TTTCCATACTTCCTGCTACCGAGCTTGTTCCAGGCGATATTGTGGAAGTCAGTGTGGGATGCAAGGTTCCTGCTGACATGAGAATGATTGAGATGCTAAG TAATCAGTTACGTGTTGATCAAGCAATCCTTACTGGCGAGAGCTGTTCTGTTGAAAAAGAGCTTGAGTCCACCATAGCAACAAATGCTGTGTACCAAGAC AAAACAAATATTATTTTCTCGGGTACAGTAGTGGTTGTGGGCAGGGCACGAGCTGTTGTTGTTGGAGTTGGGGCCAATACTGCCATGGGGAACATCCGCG ATTCCATGTTGCGGACAGATGATGAAGCAACTCCATTGAAGAAGAAGTTGGATGAATTTGGCACTTTTTTGGCTAAGGTTATTGCAGGGATTTGTATACT TGTGTGGATTGTAAACATTGGTCACTTCCGTGACCCTTCTCATGGCGGGTTCTTGCGTGGTGCAATCCACTATTTCAAGATTGCAGTTGCCCTTGCGGTT GCAGCAATTCCTGAAGGGCTTCCAGCAGTCGTTACAACGTGTTTGGCTCTTGGAACAAAGCGTATGGCTCGGTTGAATGCCATTGTGCGGTCTTTGCCAT CTGTGGAGACATTAGGCTGCACTACAGTAATCTGCAGTGATAAGACCGGAACATTGACAACTAATATGATGTCAGTCTCAAAGATATGTGCTGTTCATTC TGTTCATCGTGGTCCAACTATTGCTGAATACAGTGTAAGTGGGACAAGTTATGCTCCAGAAGGCATGATTTTTGGCAGCAGTGGATTGCAGATTGAATTT CCAGCACAGTTGCCTTGTCTTCTTCACATTGCAATGTGTTCGGCTGTTTGCAATGAGTCTATCTTACAATATAATCCAGACAGGGGAATCTACGAAAAAA TTGGGGAGTCCACTGAAGTGGCGCTTCGTGTTCTGGCAGAAAAGGTTGGCCTTCCTGGTTTTGATTCCATGCCCTCTGCACTGCATATGCTGACCAAGCA TGAGCGCGCGTCGTACTGTAATCAGTATTGGGAAAGCCAATTCAAAAAGGTTTCTGTTTTGGAATTCTCTCGTGATCGAAAAATGATGTCTGTCTTATGT AGTCGGAAGCAGACAAAGATTATGTTTTCAAAAGGTGCTCCAGAAAGTATTGTCTCTAGATGCTCCAATATTCTTTGCAATGATGATGGTTCTACCGTAC CATTGTCTGTTGCTGTCCGAGATGAGTTAGAGTCAAGGTTCCACAGTTTTGCAGGAAAAGAAACATTGAGATGCCTGTCTCTAGCTTTCAAACAGATGCC CATTGGTCAACAGACTCTCTCCTTTGAAGATGAGAAGGACCTTACATTTATTGGGTTGGTTGGAATGCTTGATCCACCTAGAGAGGAAGTGAGAAATGCT ATGCTTTCATGCATGACTGCTGGTATACGTGTTATAGTTGTCACTGGGGACAACAAGTCAACAGCAGAATCACTTTGTAATAAGATTGGTGCTTTTGATC ATTTGGAAGATTTTGCTGGACGCTCATACACTGCTTCTGAGTTCGAAGAGCTTCCAGCTTTGCAGCAAACACTAGCTTTGCAACGCATGGCACTTTTTAC CAGGGTTGAACCTAGTCATAAAAGGATGCTGGTGGAGGCCTTGCAACATCAAAATGAAGTGGTGGCAATGACTGGTGATGGTGTCAATGATGCACCTGCA CTAAAGAAAGCAGATATAGGAATTGCCATGGGATCTGGAACAGCAGTTGCAAAGAGTGCTTCAGATATGGTTTTGGCAGATGACAATTTCGCTTCCATTG TTGCGGCTGTTGCAGAGGGAAGGGCTATATACAATAATACAAAGCAATTCATTAGATACATGATCTCCTCAAATATCGGTGAAGTAGTTTGTATCTTTGT GGCAGCTGTACTTGGAATACCTGATACCCTTGCTCCTGTCCAACTGCTCTGGGTCAATTTGGTTACTGATGGGTTGCCTGCCATTGCTATTGGTTTCAAC AAGCAGGATTCTGATGTAATGAAGGTTAAACCTCGAAAGGTAAACGAAGCAGTTGTTAGTGGGTGGTTGTTTTTTCGTTATTTGGTAATTGGAGCTTATG TTGGCCTTGCCACCGTTGCGGGATTCGTGTGGTGGTTTGTATATTCTGATACGGGTCCCAAACTACCATACAAAGAACTGATGAATTTTGACAGTTGCTC AACAAGGGAGACAACTTACCCGTGCAGTATATTTGATGATAGGCATCCATCAACTGTATCCATGACAGTGCTTGTTGTTGTTGAGATGTTTAATGCTTTG AATAATCTCAGTGAGAATCAATCTCTTCTTGTTATCCCTCCCTGGAGTAATTTATGGCTTGTTGCTTCAATTGTCCTGACTATGCTCCTTCATATACTGA TCTTGTATGTGCACCCGCTATCTATTCTTTTCTCTGTAACGCCATTATCTTGGGCTGAGTGGAAAGTTGTCTTGTATCTTTCCTTCCCTGTCATAATTAT TGATGAAATCCTGAAGTTCTTCTCAAGAAATTCCACTGGCCTGAGGTTGGGTTTGAGATTCAGAAGACCTGATTTGCTTCCAAAAAGAGAATTGCGTGAT AAGTGA
AA sequence Show only first row Show all	>Potri.014G014700.2 pacid=42764587 polypeptide=Potri.014G014700.2.p locus=Potri.014G014700 ID=Potri.014G014700.2.v4.1 annot-version=v4.1 MEDAYARSITEVLDFFGVDPGKGLSDSQVALHSKIYGKNVLPEETRTPFWKLVLKQFDDLLVKILIAAAAVSLVLALINGETGLAAFLEPFVILLILAAN AAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPATELVPGDIVEVSVGCKVPADMRMIEMLSNQLRVDQAILTGESCSVEKELESTIATNAVYQD KTNIIFSGTVVVVGRARAVVVGVGANTAMGNIRDSMLRTDDEATPLKKKLDEFGTFLAKVIAGICILVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAV AAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICAVHSVHRGPTIAEYSVSGTSYAPEGMIFGSSGLQIEF PAQLPCLLHIAMCSAVCNESILQYNPDRGIYEKIGESTEVALRVLAEKVGLPGFDSMPSALHMLTKHERASYCNQYWESQFKKVSVLEFSRDRKMMSVLC SRKQTKIMFSKGAPESIVSRCSNILCNDDGSTVPLSVAVRDELESRFHSFAGKETLRCLSLAFKQMPIGQQTLSFEDEKDLTFIGLVGMLDPPREEVRNA MLSCMTAGIRVIVVTGDNKSTAESLCNKIGAFDHLEDFAGRSYTASEFEELPALQQTLALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPA LKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPAIAIGFN KQDSDVMKVKPRKVNEAVVSGWLFFRYLVIGAYVGLATVAGFVWWFVYSDTGPKLPYKELMNFDSCSTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNAL NNLSENQSLLVIPPWSNLWLVASIVLTMLLHILILYVHPLSILFSVTPLSWAEWKVVLYLSFPVIIIDEILKFFSRNSTGLRLGLRFRRPDLLPKRELRD K

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.014G014700 [exp]	0	1	Pt-ECA3.3
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	2.23	0.8341	Pt-ARF1.11
AT2G21630			Sec23/Sec24 protein transport ...		Potri.014G178500 [exp]	2.44	0.8412
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Potri.006G216900 [exp]	3.00	0.8919
AT1G50730			unknown protein		Potri.001G356700 [exp]	4.89	0.8326
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	5.09	0.8719
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Potri.008G174800 [exp]	7.07	0.7965
AT2G01690			ARM repeat superfamily protein...		Potri.008G134600 [exp]	11.31	0.8018
AT5G06120			ARM repeat superfamily protein...		Potri.003G189500 [exp]	11.53	0.7997
AT1G12470			zinc ion binding (.1)		Potri.013G147600 [exp]	14.00	0.7936
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Potri.008G148100 [exp]	16.24	0.8105	Pt-SUC3.2

Compare expression of checked genes

Potri.014G014700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.