Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G07410 1032 / 0 PCN POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) AT1G27470 993 / 0 transducin family protein / WD-40 repeat family protein (.1) AT5G13480 49 / 1e-05 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G18130 47 / 3e-05 RACK1C_AT receptor for activated C kinase 1C (.1) AT5G43920 45 / 0.0002 transducin family protein / WD-40 repeat family protein (.1) AT1G48630 44 / 0.0002 RACK1B_AT receptor for activated C kinase 1B (.1) AT1G18080 44 / 0.0003 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 44 / 0.0003 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G117500 [exp] 1480 / 0 AT4G07410 1053 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) Potri.T125206 [exp] 54 / 4e-07 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G197900 [exp] 54 / 5e-07 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G026800 [exp] 53 / 7e-07 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G157900 [exp] 53 / 7e-07 AT5G21040 670 / 0.0 F-box protein 2 (.1.2) Potri.009G058000 [exp] 48 / 2e-05 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.007G009500 [exp] 43 / 0.0006 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G145800 [exp] 43 / 0.0007 AT4G29830 486 / 2e-174 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024128 [exp] 1085 / 0 AT4G07410 996 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) Lus10005385 [exp] 758 / 0 AT4G07410 704 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) Lus10026770 [exp] 59 / 1e-08 AT5G21040 647 / 0.0 F-box protein 2 (.1.2) Lus10026837 [exp] 56 / 1e-07 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10008402 [exp] 56 / 1e-07 AT5G21040 658 / 0.0 F-box protein 2 (.1.2) Lus10020214 [exp] 56 / 2e-07 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024727 [exp] 47 / 4e-05 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039597 [exp] 47 / 5e-05 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10014674 [exp] 45 / 0.0001 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029493 [exp] 45 / 0.0002 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.014G014900.1 pacid=42763279 polypeptide=Potri.014G014900.1.p locus=Potri.014G014900 ID=Potri.014G014900.1.v4.1 annot-version=v4.1 ATGCTAGGAGCTGCTTATAGGAACAGCTCAATCGAGTGGAGGCCGTCTCCAGTTGTATCTCTAGCCACCAGCGCCGACGAGTCTCAGGTCGCTGCTGCCC GTGAAGACGGCTCACTGGAGATTTGGCTCGTCTCTCCTGGCGCTGTCGGTTGGCACAACCAGCTGACGATTCACGGGAACCCTAATTCGAGAGTTTCGTC ACTTGCGTGGTGTCGTGCTGGCTCGAAAGGATTGCCATGTGGTAGATTGTTTTCGTCTAGCATTGATGGTTCAGTTTCGGAGTGGGATCTTTTTCATTTA AAGCAGAAGAATGTGCTGGAGTCAATTGGGGTCTCAATTTGGCAGATGGCAGTAGCGCCTTCTAGTAATTCAGCTATTCACACAGAGCATAAGCCACCGC ACCTTGGAAATGGGTACTTAAATGGTAGACACAAAGGTGGTGAAGAGTCCGAATACAGCAGTGAGAGTGAAGATGATTCAGATTTGGATGAACAACGTGA GCAAATAGTTGTTGAGGATCCATGTCTGGCAATTGCTTGCGATGATGGGTGTGTTCGGATATACACTGTTCCTGAATCAGATGGGTTAACATACAATAAA ACGTTGCCCAGGGTCAGTGGGCGTGTTTTAAGTGTGACGTGGAGTCCTGATGCGAGTAGAATATATTCAGGCAGTAGTGATGGGTTTATAAGGTGCTGGG ATGCTAAGCTGGGTAACGAGATATACCGGATTACAGCTGGGCTTGGTGGTTTGGGTAGCGGACCGGACCTTTGTATTTGGTCTTTACTTGCCCTGAGATG TGGGACCCTTGTTAGTGCAGACAGTACTGGTGCTGTTCAGTTCTGGGACTCTCAACATGGGACACTTTTGCAGGCGCATACTTCTCACAAGGGTGATGTG AATGCTTTGGCAGCTGCACCTAGTCATAACAGGGTGTTCTCTGCTGGATCTGATGGTCAGGTTATTCTTTATAAGCTTTCTAGTGAGACAGTTGAATCTG GTAATGACATATCTTCTTCTAAGATGTTGAAGAAATGGATCTATGTTGGTTATGTAAGAGCTCATACACATGATGTTAGAGCCTTGACAGTGGCAGTACC CATTAGTCGAGAAGATCCTTTGGCTGATGATAAAATTAAAAGAATTCGTCATAAAAAAAAGCCCATTGATTTTAGTTATAGTAAGTGGGCGCATTTGGGA GTTCCTATGCTTATCTCTGCTGGTGATGACACAAAGCTCTTTGCCTATTCTGCTCAGGAATTCACTAAGTTCTCACCCCATGATATCTGCCCAGCACCCC AAAGAGTGCCAATTCAGTTGGCTCTTAATACTGTATTCAACCAGAATTGCTTGCTTCTAGTCCAGTCATCTTCCTGGTTAGATATACTCTGTGTTCAAAC AAAAGGTGGATCCATGACTGGTCCTGGTCCGTCAAGGGGCCGTGCAACAACTGATATTCTAGCTCGAATTAAGACTAAGGGATCTCGGAAAATTATTTGC AGCACAATTTCTAATGCAGGGGTTCTATTTGCTTACTCAGACCATGTTAAACCCAACCTTTTTGAATTGAAGAAGGATGTCAGAAAAAGTGCGTGGACTG TTAATAAAAAGCCTCTCCCTCAGAAATTGCCATATGCACATTCCATGGTTTTCAGTGCTGATTCATCTCGATTGATGATAGCAGGGCATGATAGAAGGAT ATATGTTGTGGATGTGTGCAGCACAGAGCTAGTACATACCTTTACACCACGTTGTGAGGGAAATGATGAGGAATTACCACCCAATGAGCCTCCCATAACA AAAATGTTTACTAGTTGTGATGGGCAGTGGTTATCTGCCATCAACTGCTTTGGAGACATATATGTTTTTAATCTGGAGACACAAAGGCAACACTGGTTTA TAGCAAGATTGGATGGTGCCTCTGTAACAGCTGGTGGTTTCCCCCCTCAAAAGAACAATGTGCTCGTAGTCACAACCTCTTCAAATCAGGTCTATGCATT TGATGTGGAGGCAAAACAGTTAGGAGAATGGTCAACACGGCATACATTTGTTCTACCGAGGAGATACCAAGAATTTCCTGGGGAGGTCATTGGGCTATCG TTCCTGCCTATGTCAAGCCCTCCTTCTGTTATCATTTATAGTGCCAGGGCAATGTGCTTGATTGACTTTGGGATGCCAGTGGATCGAGAGGAAGATAGTG ACTTGGTAAACGGCCAGCATTCTCCACTGAAGAAGTTACAAACTACTACCATGAATGGGGGACTGAAACGTAGGTTGAAAGAATACCAACCAGAGACCAA ACTTAGGAAAAATTTTGAAATTCTTGCTTTCAGAGATCCTGTTTTATTTATTGGCCACCTTTCTGAAAATTCTATCTTGATCATGGACAAACCATGGATG GATGTGGTTAAAACTTTTGATGCCCAACCTGTCCACAGACATATATTTGGGACGTAA
AA sequence Show only first row Show all	>Potri.014G014900.1 pacid=42763279 polypeptide=Potri.014G014900.1.p locus=Potri.014G014900 ID=Potri.014G014900.1.v4.1 annot-version=v4.1 MLGAAYRNSSIEWRPSPVVSLATSADESQVAAAREDGSLEIWLVSPGAVGWHNQLTIHGNPNSRVSSLAWCRAGSKGLPCGRLFSSSIDGSVSEWDLFHL KQKNVLESIGVSIWQMAVAPSSNSAIHTEHKPPHLGNGYLNGRHKGGEESEYSSESEDDSDLDEQREQIVVEDPCLAIACDDGCVRIYTVPESDGLTYNK TLPRVSGRVLSVTWSPDASRIYSGSSDGFIRCWDAKLGNEIYRITAGLGGLGSGPDLCIWSLLALRCGTLVSADSTGAVQFWDSQHGTLLQAHTSHKGDV NALAAAPSHNRVFSAGSDGQVILYKLSSETVESGNDISSSKMLKKWIYVGYVRAHTHDVRALTVAVPISREDPLADDKIKRIRHKKKPIDFSYSKWAHLG VPMLISAGDDTKLFAYSAQEFTKFSPHDICPAPQRVPIQLALNTVFNQNCLLLVQSSSWLDILCVQTKGGSMTGPGPSRGRATTDILARIKTKGSRKIIC STISNAGVLFAYSDHVKPNLFELKKDVRKSAWTVNKKPLPQKLPYAHSMVFSADSSRLMIAGHDRRIYVVDVCSTELVHTFTPRCEGNDEELPPNEPPIT KMFTSCDGQWLSAINCFGDIYVFNLETQRQHWFIARLDGASVTAGGFPPQKNNVLVVTTSSNQVYAFDVEAKQLGEWSTRHTFVLPRRYQEFPGEVIGLS FLPMSSPPSVIIYSARAMCLIDFGMPVDREEDSDLVNGQHSPLKKLQTTTMNGGLKRRLKEYQPETKLRKNFEILAFRDPVLFIGHLSENSILIMDKPWM DVVKTFDAQPVHRHIFGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.014G014900 [exp]	0	1
AT5G41190			unknown protein		Potri.003G124700 [exp]	1.41	0.9047
AT4G04940			transducin family protein / WD...		Potri.006G078900 [exp]	1.41	0.9068
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G130600 [exp]	2.64	0.8525
AT5G07900			Mitochondrial transcription te...		Potri.003G190400 [exp]	2.82	0.8628
AT1G29350			Kinase-related protein of unkn...		Potri.011G078800 [exp]	4.12	0.8054
AT5G14520			pescadillo-related (.1)		Potri.004G121400 [exp]	4.89	0.8687
AT2G19540			Transducin family protein / WD...		Potri.007G094000 [exp]	6.00	0.8225
AT1G42440			unknown protein		Potri.005G250100 [exp]	7.41	0.8289
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.003G190000 [exp]	9.94	0.7739
AT4G11790			Pleckstrin homology (PH) domai...		Potri.003G120900 [exp]	10.00	0.7555

Compare expression of checked genes

Potri.014G014900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.