Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31540 249 / 7e-73 ATEXO70G1 exocyst subunit exo70 family protein G1 (.1) AT5G52340 169 / 1e-44 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G03540 167 / 2e-44 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT1G51640 169 / 3e-44 ATEXO70G2 exocyst subunit exo70 family protein G2 (.1) AT5G52350 149 / 6e-38 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT1G54090 148 / 2e-37 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G50380 140 / 2e-34 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 137 / 1e-33 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 134 / 1e-32 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT5G13990 133 / 3e-32 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G272900 [exp] 240 / 2e-69 AT4G31540 1010 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.018G008400 [exp] 236 / 6e-68 AT4G31540 971 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.010G250500 [exp] 200 / 4e-55 AT4G31540 731 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.008G008700 [exp] 186 / 4e-50 AT4G31540 716 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.016G071000 [exp] 167 / 1e-43 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.006G203900 [exp] 163 / 3e-42 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.008G017800 [exp] 156 / 6e-40 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 154 / 2e-39 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.017G093966 [exp] 142 / 2e-35 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007751 [exp] 944 / 0 AT4G31540 239 / 8e-69 exocyst subunit exo70 family protein G1 (.1) Lus10018672 [exp] 923 / 0 AT4G31540 231 / 3e-66 exocyst subunit exo70 family protein G1 (.1) Lus10027347 [exp] 882 / 0 AT4G31540 239 / 3e-69 exocyst subunit exo70 family protein G1 (.1) Lus10014917 [exp] 879 / 0 AT4G31540 242 / 4e-70 exocyst subunit exo70 family protein G1 (.1) Lus10026230 [exp] 238 / 8e-69 AT4G31540 1045 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10042439 [exp] 237 / 3e-68 AT4G31540 1034 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10021283 [exp] 163 / 3e-42 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10037329 [exp] 154 / 5e-39 AT4G31540 627 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10043432 [exp] 149 / 2e-37 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10008126 [exp] 140 / 2e-34 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.014G015500.1 pacid=42762468 polypeptide=Potri.014G015500.1.p locus=Potri.014G015500 ID=Potri.014G015500.1.v4.1 annot-version=v4.1 ATGGCACTCCATGAAGAGGATTCATTGATATCCGAGCTGAATTTAGCATGTTCTGATTTGAAAACACTGCTTCAAGCCTCTTCCAAGATCGAAGATACCT TAGAAAAAATAGATAAAAAGTTCGATGTTATAGATGAAAGTCTCTCAACATCCTCAAGAAGAGTAGCTCCTTTGCATTCTTTGGCCATGGCTGCAAAAGC CCTTGAAACCAGAATCAATAGAGCTGTCTCTCCCGCCCTTGCCCTCCTGGACAGCTTCAAGCTCTGTGAGTCTCTCCAACAGAAGCTCCTCGAGGTTTCC TCCCAATTATCTGCAGATAAAAATCCCAAGAAACGGCTAAAGCTCTTGCTTAAACTTGTTGATTGTGTTGATAAGCTAAATGCAGTCATAAACACAATTA GTGAAGATGGTGAGCCAGTGATTCAAAAGCTGCAAGAGGTGGTGGAATTCTTGAGCAGGACCAAAGCCACGGATCAGTACAGGGCGTATAGATTAAGAGA GACTTTGGTCACACTCAAGATTCTTTACGAGACAGAGATTGATGCAATGAAGTTTGATGGGTTGCTTGACGAGGCTTTACTCCATTTGCAAGATGAGCAT GAGAGCATACTGCAGAAACTGAAGCACCATAATATTGATGAATCCCAGGGGGGTAATAAACTTGACATGGCTGATTCTGATCTGGGAACAGAGCTGGATA TTGAAGTCCTCAGACGAATTTCAGAAACTCTAGCCGCCAATGATTGCCTGGACATATGCATTGATATCTACGTCAAGGTGAGATATGTAAGAGCAGCGAA AGCATTGATGCGGCTAAACCCAGATTATTTGAAGACATACACTCCTGAAGAAATTGATGAAATGGAGTGGGGGACTTTAGAGACAGCGATAAGCCTTTGG ATTCAACATTTTGAACTTGCATTGAGAACAGTATTTGTGTCCGAAAAGAAGCTTTCAAACCAAATCCTGGGAGGGATTTTGGATGGAGCTGTCTGGCTAG AATGCTTTGTCAAGATTGCAGATAAAATCATGGCAGTCTTCTTTCGATTTGGAGAAGGTGTTGCAAGGAGCAATAAAGAGCCCCAGAAGCTTTTTAAGCT CTTAGACATGTTTGACTCCTTAGAAAAGCTTAAAACGGAGTTCTCTGAGATTTTTGAAGGCGAAGCTGGTGCTGATATATGTACAAGATTTAGGGAACTA GAAAAACTCCTCGTCCATTCTTCAAGCAAAGTGTTTTGGGAGTTTGGTCTCCAAATTGAAGGCAATTCAGATGGTTTCCCTCCACCACAAGATGGTTCAG TCCCAAAACTTGTAAGATATGCCATTAACTATCTTAAATACCTTGCCTCAGAAACTTATAGTGCACCTATGGCCAAAGTTCTCCTCACAGAAAAAATATG GAAAGCTGGAATTTTATCGAAACCCGAACCTGAAGAGAACTTACTCAGAGATGCAATTGCCAACATCATGGAGGCACTTCAAAGGAATGTCGAATCGAAA AAACTGCGTTACAAGGACAGAATCCTGCCCCAAGTATTTGCCATGAACACATATTGGTACATTTACATGAGAACAAGAAACACAGAACTTGGGAAGCTAT TGGGAGAGCAGTACTTGAAAATGAATTACAAGGTTGTTGCCGAGGAATCAGCTTACATGTATCAAAGGCAAGCTTGGAAACCTCTTGTGAGATTGCTTGA CAAGGAAGAATTGAAAAGAGAAAACAAAAGTGACAATGAGGATACGAGGGCTTTGATCAGAGAGAAAATGGAAGGTTTCTTGAAGGGCGTTAGCGAGGTT TCACATAGGCATAGATCAGGGTCTTACACAATTCATGATGTTGATCTGAGAGAGCAGATCAAAGAAGCCACTGTGAAGCTAGTGGTTCCTGCTTACATTG AGTTCTTGAATGCTTATTCAAGTGCTTTGCCATCTAAATCATATGTTAAACCTGAGGCAGTCCAGGGATTGTTGGATCAGATTTTCAACGGCAGCGATGG CAAATTGAAGCGTCGTGATTCAAAGCACTGGACACGTGGAGGGACTTCATCTTCCTTTGACGGTGAGAGCAAGGATTTGAGAAGGTTAAGGTCATACACT AGCGACATGTAG
AA sequence Show only first row Show all	>Potri.014G015500.1 pacid=42762468 polypeptide=Potri.014G015500.1.p locus=Potri.014G015500 ID=Potri.014G015500.1.v4.1 annot-version=v4.1 MALHEEDSLISELNLACSDLKTLLQASSKIEDTLEKIDKKFDVIDESLSTSSRRVAPLHSLAMAAKALETRINRAVSPALALLDSFKLCESLQQKLLEVS SQLSADKNPKKRLKLLLKLVDCVDKLNAVINTISEDGEPVIQKLQEVVEFLSRTKATDQYRAYRLRETLVTLKILYETEIDAMKFDGLLDEALLHLQDEH ESILQKLKHHNIDESQGGNKLDMADSDLGTELDIEVLRRISETLAANDCLDICIDIYVKVRYVRAAKALMRLNPDYLKTYTPEEIDEMEWGTLETAISLW IQHFELALRTVFVSEKKLSNQILGGILDGAVWLECFVKIADKIMAVFFRFGEGVARSNKEPQKLFKLLDMFDSLEKLKTEFSEIFEGEAGADICTRFREL EKLLVHSSSKVFWEFGLQIEGNSDGFPPPQDGSVPKLVRYAINYLKYLASETYSAPMAKVLLTEKIWKAGILSKPEPEENLLRDAIANIMEALQRNVESK KLRYKDRILPQVFAMNTYWYIYMRTRNTELGKLLGEQYLKMNYKVVAEESAYMYQRQAWKPLVRLLDKEELKRENKSDNEDTRALIREKMEGFLKGVSEV SHRHRSGSYTIHDVDLREQIKEATVKLVVPAYIEFLNAYSSALPSKSYVKPEAVQGLLDQIFNGSDGKLKRRDSKHWTRGGTSSSFDGESKDLRRLRSYT SDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.014G015500 [exp]	0	1
AT3G52460			hydroxyproline-rich glycoprote...		Potri.006G204000 [exp]	1.41	0.8253
AT2G23770			protein kinase family protein ...		Potri.005G128200 [exp]	5.09	0.8209
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Potri.008G169300 [exp]	10.95	0.7644
AT5G61280			Remorin family protein (.1)		Potri.015G049700 [exp]	11.22	0.7725
AT5G66430			S-adenosyl-L-methionine-depend...		Potri.014G168166 [exp]	11.74	0.8144
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Potri.001G252100 [exp]	20.78	0.7003
AT2G01900			DNAse I-like superfamily prote...		Potri.016G101966 [exp]	20.90	0.7715
AT4G05030			Copper transport protein famil...		Potri.006G002000 [exp]	22.80	0.8089
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.008G082301 [exp]	24.00	0.7980
					Potri.010G046225 [exp]	26.45	0.7063

Compare expression of checked genes

Potri.014G015500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.