Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22370 462 / 8e-166 QQT1, EMB1705 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G12790 162 / 4e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT4G21800 73 / 2e-14 QQT2 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G174200 [exp] 162 / 2e-48 AT4G12790 432 / 5e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.008G103000 [exp] 76 / 2e-15 AT4G21800 527 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G148000 [exp] 75 / 5e-15 AT4G21800 555 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018675 [exp] 485 / 2e-174 AT5G22370 493 / 9e-178 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10007747 [exp] 382 / 8e-135 AT5G22370 396 / 1e-140 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041086 [exp] 164 / 9e-49 AT4G12790 435 / 9e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10036411 [exp] 167 / 4e-48 AT4G12790 444 / 5e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10019602 [exp] 77 / 9e-16 AT4G21800 545 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10040022 [exp] 77 / 2e-15 AT4G21800 542 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF03029 [poplar] [flax] ATP_bind_1 Conserved hypothetical ATP binding protein
Representative CDS sequence Show only first row Show all	>Potri.014G015700.1 pacid=42764537 polypeptide=Potri.014G015700.1.p locus=Potri.014G015700 ID=Potri.014G015700.1.v4.1 annot-version=v4.1 ATGGCGTTTGGGCAAGTGGTGATTGGTCCACCGGGATCAGGCAAAACCACCTACTGCAATGGCATGTCTCAATTCTTAAGCCTCATCGGAAGGAAGGTTG CTGTTATCAATTTGGATCCAGCAAACGATGCATTGCCGTATGATTGTGCTGTTAACATTGAAGATCTTATCAAACTAAGTGATGTAATGAACGAGCATTC CCTTGGTCCCAATGGAGGTCTTGTTTATTGCATGGATTATTTGGAGAAGAATATTGACTGGTTGCAATCCAAATTGGAACCTCTGTTGAAAGATCACTAC CTTCTTTTTGATTTTCCGGGCCAGGTGGAATTATTTTTTCTCCATTCGAATGCCAAGAATGTTATCATGAAACTCATTAAGAAGTTGAGCCTTAGGTTGA CTGCCGTGCATTTAGTTGATGCCCATCTTTGCAGTGATCCTGGAAAATATGTCAGCGCATTGCTTTTGTCACTATCAACAATGCTTCATCTGGAACTCCC ACATATCAATGTCTTGTCTAAGATTGATCTAATTGAGAGCTATGGCAAGCTAGCGTTTAACCTCGATTTCTATACAGACGTGCAAGACTTATCATATTTG CAGGACCAACTTGATCAGGATCCTCGTGCTGCTAAGTACAGGAAGCTTACAAAGGAGTTGTGTGATGTAGTACAAGACTTCAGTCTTGTCGATTTTACAA CTTTAGACATTCAGGACAAAGAGAGTGTAGGGAATCTTGTGAAGTTGATAGACAGGACCAATGGGTACATCTTTGCTGGCGTGGAATCCAGTGCAGTTGA ATTCAGCAAGATTGCAGTTCGCCCTGTTGATTGGGATTACTACAGAGTTGCAGCAGTGCAAGAGAAGTACATGAAGGATGATGAAAATTTTGGCAATGAC ATCTGA
AA sequence Show only first row Show all	>Potri.014G015700.1 pacid=42764537 polypeptide=Potri.014G015700.1.p locus=Potri.014G015700 ID=Potri.014G015700.1.v4.1 annot-version=v4.1 MAFGQVVIGPPGSGKTTYCNGMSQFLSLIGRKVAVINLDPANDALPYDCAVNIEDLIKLSDVMNEHSLGPNGGLVYCMDYLEKNIDWLQSKLEPLLKDHY LLFDFPGQVELFFLHSNAKNVIMKLIKKLSLRLTAVHLVDAHLCSDPGKYVSALLLSLSTMLHLELPHINVLSKIDLIESYGKLAFNLDFYTDVQDLSYL QDQLDQDPRAAKYRKLTKELCDVVQDFSLVDFTTLDIQDKESVGNLVKLIDRTNGYIFAGVESSAVEFSKIAVRPVDWDYYRVAAVQEKYMKDDENFGND I

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Potri.014G015700 [exp]	0	1
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Potri.011G123900 [exp]	6.24	0.8702
AT4G34660			SH3 domain-containing protein ...		Potri.009G123200 [exp]	9.16	0.8369
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.013G090500 [exp]	23.45	0.8569
AT2G14835			RING/U-box superfamily protein...		Potri.001G294200 [exp]	24.24	0.8499
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Potri.010G051500 [exp]	26.26	0.8346	ARP3.2
AT3G27325			hydrolases, acting on ester bo...		Potri.001G338000 [exp]	27.87	0.8529
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.014G015600 [exp]	27.96	0.8270
AT5G56890			Protein kinase superfamily pro...		Potri.006G152000 [exp]	28.46	0.8409
AT5G24170			Got1/Sft2-like vescicle transp...		Potri.012G012700 [exp]	37.81	0.8397
AT5G04420			Galactose oxidase/kelch repeat...		Potri.010G230300 [exp]	39.94	0.8408

Compare expression of checked genes

Potri.014G015700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.