Plant FIBer expression Database

Potri.014G015800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G59590 102 / 5e-26 ZCF37 ZCF37 (.1)
AT1G10220 86 / 2e-19 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G118200
[exp]
311 / 3e-107 AT1G59590 81 / 5e-18 ZCF37 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007746
[exp]
120 / 6e-32 AT1G59590 118 / 5e-32 ZCF37 (.1)
PFAM info
Representative CDS sequence
>Potri.014G015800.1 pacid=42762926 polypeptide=Potri.014G015800.1.p locus=Potri.014G015800 ID=Potri.014G015800.1.v4.1 annot-version=v4.1
ATGTTGAGCTCATTCATCTGTGGCAGTTTTAAGAATCAATTGGAGGTAGAAGAGGAATCATGGAACAGCCCTTCTTCAACACCAGAAAGATCAAGCCCTT
CTGCAACACCAGAAAGATCAAGCCCTTCTGCAACACCAAGAAAATCAAGAAAGAGTTCCAAGACTAGCAAGAATAGCAAGAACCCATATTCGTCCCGTGG
CCTTGACAAGTTCTCTGCACTTCTAGCGGAACTTGAAGAGAAAAAGCAGAAGATATATTCACAGATGGGGCCTGAAGATGTACCCATGGTTCGTTTCGTC
TACTCAAGTTCAAATGATTGTATTCCTCTTATAATCAAGGTTAAAGATCAAAAGCAAGACAAACCCAGGATCGGTAGCGCTAATGATATCAAAGAAAACC
CCAACACTCGCAACAATGAAGGCTTGGATAAGTTGCCAATAGAGGCACCAGTTGAAGAGAAACAAGTCGAGCAACCAAGATTGGAAACTGCTAAAAAGAC
TGAGAATAAATCTTTTACATGGAACATGAAGTTGCACCGATGGCGAAGACCTTATTATTATATGCCAGTTGCTCTCATCTTGATTTTGTTATTGGTGGTT
CTGTTTGGGCGATCAGTTGCTATATTATTGACCTCTCTTGCCTGGTATATAGTCCCTGCATTGAGTACAAAAAAGCCATCACAGAAGAAAGATTATGTCA
GAAGATTAAGTGAGCCGGCCAAGATGATGATTAATCATGGGGTATCTTCTCCAGCGAGAAAGAGTACTGGCTCTACGGCCGATAAATGGCCTCGACGACA
TGGGCAGCGAAAAAGCTTCTGA
AA sequence
>Potri.014G015800.1 pacid=42762926 polypeptide=Potri.014G015800.1.p locus=Potri.014G015800 ID=Potri.014G015800.1.v4.1 annot-version=v4.1
MLSSFICGSFKNQLEVEEESWNSPSSTPERSSPSATPERSSPSATPRKSRKSSKTSKNSKNPYSSRGLDKFSALLAELEEKKQKIYSQMGPEDVPMVRFV
YSSSNDCIPLIIKVKDQKQDKPRIGSANDIKENPNTRNNEGLDKLPIEAPVEEKQVEQPRLETAKKTENKSFTWNMKLHRWRRPYYYMPVALILILLLVV
LFGRSVAILLTSLAWYIVPALSTKKPSQKKDYVRRLSEPAKMMINHGVSSPARKSTGSTADKWPRRHGQRKSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G59590 ZCF37 ZCF37 (.1) Potri.014G015800
[exp]
0 1
Potri.001G078300
[exp]
4.00 0.8692
AT1G68450 PDE337 PIGMENT DEFECTIVE 337, VQ moti... Potri.010G123700
[exp]
6.32 0.8820
AT2G03220 ATFUT1, ATFT1, ... MURUS 2, ARABIDOPSIS THALIANA ... Potri.001G034100
[exp]
7.34 0.8830
AT3G53820 C2H2ZnF C2H2 and C2HC zinc fingers sup... Potri.016G101300
[exp]
16.06 0.8534
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.001G134601
[exp]
16.43 0.8555
AT2G38790 unknown protein Potri.008G025200
[exp]
21.16 0.8497
AT3G22560 Acyl-CoA N-acyltransferases (N... Potri.008G154800
[exp]
21.63 0.8331
AT3G26040 HXXXD-type acyl-transferase fa... Potri.010G056300
[exp]
22.24 0.8336
AT3G63010 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/... Potri.002G213100
[exp]
26.64 0.8336
AT5G44440 FAD-binding Berberine family p... Potri.011G162828
[exp]
30.88 0.8183

Potri.014G015800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.