Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NPGR1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27460 841 / 0 NPGR1 no pollen germination related 1 (.1) AT4G28600 464 / 5e-154 NPGR2 no pollen germination related 2 (.1) AT2G43040 461 / 2e-153 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118500 [exp] 1239 / 0 AT1G27460 868 / 0.0 no pollen germination related 1 (.1) Potri.008G169500 [exp] 527 / 3e-178 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 525 / 1e-177 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.002G259300 [exp] 515 / 6e-174 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.002G055200 [exp] 499 / 4e-168 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018678 [exp] 583 / 0 AT1G27460 454 / 1e-152 no pollen germination related 1 (.1) Lus10011793 [exp] 552 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10023748 [exp] 546 / 0 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10022897 [exp] 492 / 1e-164 AT4G28600 736 / 0.0 no pollen germination related 2 (.1) Lus10008236 [exp] 480 / 6e-160 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10024926 [exp] 478 / 2e-159 AT4G28600 726 / 0.0 no pollen germination related 2 (.1) Lus10003618 [exp] 467 / 6e-155 AT4G28600 728 / 0.0 no pollen germination related 2 (.1) Lus10020725 [exp] 460 / 1e-152 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10017638 [exp] 454 / 1e-150 AT2G43040 929 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10033595 [exp] 453 / 2e-150 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13181 [poplar] [flax] TPR_8 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.014G016000.2 pacid=42764730 polypeptide=Potri.014G016000.2.p locus=Potri.014G016000 ID=Potri.014G016000.2.v4.1 annot-version=v4.1 ATGTTGTGTGCTTGCTCAGGAGAGCAATTCAAACTTGATGAACCACCGCAGTCACCGGAGTCGCTGGCAACAAGGGATTTCTCGGCGAGTGGGCTTTCGT CGAGGACAACCGGAGACCGGGAGTCTAAACTTGAGGATTTCCAAGTGGATGAAGCTGAATCTACTCTCAAAGAGGCTCTCTCATTGAATTATGAGGAAGC AAGGGCATTGTTAGGGAGACTTGAATATCAGAGAGGGAACTTTGATGCAGCCCTTCAGGTATTCCAGGGTATTGACATCAGTGTTTTGACCCCCAAAATG ATTAAGGCAATTGTTGAAAGAATTCAGTATAGAAAGCCGCGTTCCAAAGGTGAAATTGTGCCTCCAAGTGTGATGTCTATGCATTCAGTGAGTCTTCTTG TTGAAGCAATCTTGCTAAAAGCTAAATCACTCGAGGAACTTGCGCAGTATAGAGAGGCTGCAAAGGAATGCGGAATTATTTTGGACATAGTTGAATCAGC ACTGCCCAATGGCATTCCTGAAGGCATTGGTGAAGACTGCAAGCTGGAGGAGATGTTTCACAAAGCATTAGAGTTGCTACCTGCTCTGTGGACAAAGGCG GGCTTGCTCGACCAAGCTATTGCTTCATATCGTAGGGTTCTCATCAGGCCATGGAATTTGAACCCACAGAAGTTGGCTGGAGTGCAGAAGGAATTAGCTT CTATGTTACTTTATAGTGCTGTTGAAGCAACACTTCCCCCTCAGTTACAGCTATGGGGTCTTGCTAGCCCCCAGAGTAACATAGAGGAAGCAATTCTCTT GTTATTAGTACTCATGAGTAAGGTGGCTTGTGGGGAAATAAAGCGGGATGAAGAAATCATGGACCATCTGACTTATGCACTCTCAATTGTGGGGCAATTT GAGTTATTAGCTGAACATGTGGAGCAGGCCCTTCCAGGTATCTATAACCGAGCTGAGAGATGGTACCTTCTTGCTCTTTGTTACAGTGCTGCAGGTCAGA ACGAAGCAGCTCTGAACCTGCTAAAGAAAGTTTCTGGTTGTTCAGAATCAAAGAACAAACCACATATCCCTTCCTTTTTGTTGGGAGCGAAGTTGTGTTC CCAAGACTCAAAGCATGCCCATGAAGGCATAAATTTTGCGCGTAAGGTTCTTGACTTGGCTGATCATCAAAATCAACATTTCATTGGTCAGGCACACATG CTCCTTGGTGTTTGCCATGGGAATGCTGCAAGAATTTCCTTGTCTGATTCTGAAAGAGTTCTTTTACATAAAGAGTCTTTGAACTCTCTAAATAATGCAG CATTAAATAGGAAGGAGGATCCAGAAGTGATGTACAACCTTGGGCTGGAAAACATGCTGCAGAGGAACCTGGGTGCTGCCTTTGAAAATGCAATTGTGTG CACTGAAATGATGGCTGGAAACTCAGTAAAAGGTTGGAAGTTACTGGCCCTTGTAGTTTCCGCGGAGCAACGGTTCAGAGATGCTCAAACAGTTGTGGAG ATTGCTTTGGATGAGGCTGGGAGGATAGATCAATTTGAACTTCTGAGGTTGAAGGCTATACTACAAATTGCTCAGGAACAGCCCAAGCAAGCAATAGAAA CATATAGAATATTGCTGTCTCTTATTCAAGCACAGCGGGATAGCCAAGCCAAGAACCCTGAACAAGCGCATATCTTTAATTCTGAGGTACTTGCAGAAAG AAACTTGGAACTGGCAGCATGGCAAGATTTGGCAGACATTTACACAAAAATTGGCTCATGGAGTGATGCCAAAATTTGTGTGGACAAAGCCAAGTTAATG GAGCTTCACTCTCCTAGAAGTTGGCACGTGACAGGAATGTTATTTGAAGCTCAATCACTGCACAAAGAAGCCCTTGTTTCCTTCTCGGTTGCATTGTCGG TGGAACCGGATTATATACCAAGCATTGTTGCAACAGCAGAAGTCTTGATGAAGCCTGGTACTCAGTCATTTTCCATTGCCAGAAGCTTTTTAATGCATGC GTTGAGATTGGACCCCACAAATCACGAAGCATGGTTAAATCTTGGGTTGATTTCAAAAATGGAAGGCTCTTTAAAACAAGCGGCAGAATTTTTTCAAGCT GCACATGAACTCAAGCTGTCAGCTCCCATTCAAAGCTTTCTGTGA
AA sequence Show only first row Show all	>Potri.014G016000.2 pacid=42764730 polypeptide=Potri.014G016000.2.p locus=Potri.014G016000 ID=Potri.014G016000.2.v4.1 annot-version=v4.1 MLCACSGEQFKLDEPPQSPESLATRDFSASGLSSRTTGDRESKLEDFQVDEAESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDISVLTPKM IKAIVERIQYRKPRSKGEIVPPSVMSMHSVSLLVEAILLKAKSLEELAQYREAAKECGIILDIVESALPNGIPEGIGEDCKLEEMFHKALELLPALWTKA GLLDQAIASYRRVLIRPWNLNPQKLAGVQKELASMLLYSAVEATLPPQLQLWGLASPQSNIEEAILLLLVLMSKVACGEIKRDEEIMDHLTYALSIVGQF ELLAEHVEQALPGIYNRAERWYLLALCYSAAGQNEAALNLLKKVSGCSESKNKPHIPSFLLGAKLCSQDSKHAHEGINFARKVLDLADHQNQHFIGQAHM LLGVCHGNAARISLSDSERVLLHKESLNSLNNAALNRKEDPEVMYNLGLENMLQRNLGAAFENAIVCTEMMAGNSVKGWKLLALVVSAEQRFRDAQTVVE IALDEAGRIDQFELLRLKAILQIAQEQPKQAIETYRILLSLIQAQRDSQAKNPEQAHIFNSEVLAERNLELAAWQDLADIYTKIGSWSDAKICVDKAKLM ELHSPRSWHVTGMLFEAQSLHKEALVSFSVALSVEPDYIPSIVATAEVLMKPGTQSFSIARSFLMHALRLDPTNHEAWLNLGLISKMEGSLKQAAEFFQA AHELKLSAPIQSFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27460		NPGR1	no pollen germination related ...		Potri.014G016000 [exp]	0	1	Pt-NPGR1.2
AT3G08600			Protein of unknown function (D...		Potri.006G111700 [exp]	5.65	0.8768
AT3G27350			unknown protein		Potri.001G336300 [exp]	11.78	0.8989
AT2G19880			Nucleotide-diphospho-sugar tra...		Potri.006G164864 [exp]	14.38	0.8825
AT2G20635			ATP binding;protein kinases;pr...		Potri.007G139000 [exp]	15.36	0.8938
AT3G44050			P-loop containing nucleoside t...		Potri.009G156000 [exp]	23.49	0.8824
AT5G60930			P-loop containing nucleoside t...		Potri.002G106000 [exp]	29.69	0.8778
AT3G44050			P-loop containing nucleoside t...		Potri.004G193700 [exp]	34.08	0.8776
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Potri.001G041400 [exp]	38.30	0.8752
AT3G17360		POK1	phragmoplast orienting kinesin...		Potri.010G153000 [exp]	46.28	0.8681
AT4G17000			unknown protein		Potri.009G081900 [exp]	46.31	0.8736

Compare expression of checked genes

Potri.014G016000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.