Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27840 660 / 0 ATCSA-1 Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT1G19750 637 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 62 / 4e-10 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT3G18140 59 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G50230 59 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 59 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G15550 57 / 9e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G35050 57 / 9e-09 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT5G23430 56 / 3e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 56 / 6e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087200 [exp] 64 / 9e-11 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.011G045500 [exp] 60 / 2e-09 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G087200 [exp] 58 / 6e-09 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 58 / 7e-09 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G052800 [exp] 56 / 2e-08 AT3G18140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G066600 [exp] 54 / 5e-08 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.009G058000 [exp] 54 / 1e-07 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.001G026800 [exp] 54 / 2e-07 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.004G057600 [exp] 53 / 2e-07 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018680 [exp] 717 / 0 AT1G27840 629 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10007742 [exp] 706 / 0 AT1G27840 619 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10031629 [exp] 66 / 2e-11 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1) Lus10033710 [exp] 66 / 4e-11 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10022855 [exp] 63 / 4e-10 AT2G20330 885 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 61 / 1e-09 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10042333 [exp] 60 / 1e-09 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024967 [exp] 61 / 2e-09 AT2G20330 871 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027848 [exp] 58 / 6e-09 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020214 [exp] 57 / 2e-08 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.014G016100.1 pacid=42763285 polypeptide=Potri.014G016100.1.p locus=Potri.014G016100 ID=Potri.014G016100.1.v4.1 annot-version=v4.1 ATGTGGAGGGAAATCAGAGACAGAGAAGCGGGCAAAACCCGCCCCAATTCATTCAAGAACCGGGTCAGTTCCTCCAGGATCTCTAATCTTCAACTCTCCA ATTACAAAGACGTTGTCTCCCCTCACAGAGGTTCCATCAACTCTCTTCAGGTTGATTTGACAGAGGGGAGATACTTATTATCCGGGGCATCAGATGCATC AGCTTCTGTTTTTGATATTCAACATGCCACGGATTTTGAAGGGGGAGGAGAAGGAGCTCTGATTGCCAAGCACAAGTCTTTAATTACTATTGACAAGCAA CATCAAAATGGTCATAAATTTGCCATATCTTCTGCTATTTGGTATCCAATTGACACGGGCCTATTTGTTACTGGTTCTTATGATCATTATATTAAAGTTT GGGATACAAATTCCACCCAGATGGTTATCAATTTCAAATTGCCTGGAAAGGTGTATAGAACTGCAATGTCTCCGTTGGCAACTTCTCATATGTTAATAGC CGCTGGAACTGAAGATGTTCAAGTTCGACTCTGTGATATTGCTTCGGGGGCATTTGCGCATACGCTATCTGGTCATCGTGATGGTGTTATGACAGTGGAA TGGTCTACTTCAAGTGAATGGGTTCTGGTTACTGGGGGATGTGACGGTGCCATACGGTTTTGGGATATCAGGCGTGCTGGATGTTTTCTTGTTTTGGATC AGTCCCAGTCTCAGCTTGGCAGACGGCCACCTGTGCTTGCACGATCTGCCGTGAGTAAGGTTTCAACTTCAAAGGCACTATCTAAAGGCCAAAATCTCCT TGGAAAACCAAGGATGCCTCAAAAGAAATCTGGTGGTGGGAATGGAATAAAGCATTCACCTCTTGGTCAAGTTCCAGCCAAGGGATATCTAAAGCAACGA TTACATCCAGGGATGTTGTCAAGTCAGGATCGTGCCACTGCACATTATGGTGCTGTTACTGGTTTAAAAATAACTGAAGATGGCATGTATCTTCTAAGTG CAGGATCAGATTCAAGAATAAGGTTGTGGGATGTCGAATCAGGCCGCAATACCCTTGTGAACTTTGAAACTGCACGCTTACAAACTAGCAAGCCAATTCA GTTGGCCACAGCTCAGGATTCAAATCTCGTTTTTGTTCCATGCATGACCTCTGTGAAAGCATTTGATGTTTGGTCGGGTAAGACGTATGTGACATTTCGT GGCCATTACGAGCATGTGAACTGTTGCTGGTTTAGTTCTCAAGATCAGGAACTGTACACAGGTGGCAATGATAGACAAATTCTAGTTTGGTCCCCGGCCA GATTGATTCCCAACGAGGATGCAAGTCCAGCTGAGGATCAAGATAACTGGAGCGATTGA
AA sequence Show only first row Show all	>Potri.014G016100.1 pacid=42763285 polypeptide=Potri.014G016100.1.p locus=Potri.014G016100 ID=Potri.014G016100.1.v4.1 annot-version=v4.1 MWREIRDREAGKTRPNSFKNRVSSSRISNLQLSNYKDVVSPHRGSINSLQVDLTEGRYLLSGASDASASVFDIQHATDFEGGGEGALIAKHKSLITIDKQ HQNGHKFAISSAIWYPIDTGLFVTGSYDHYIKVWDTNSTQMVINFKLPGKVYRTAMSPLATSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVE WSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLGRRPPVLARSAVSKVSTSKALSKGQNLLGKPRMPQKKSGGGNGIKHSPLGQVPAKGYLKQR LHPGMLSSQDRATAHYGAVTGLKITEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETARLQTSKPIQLATAQDSNLVFVPCMTSVKAFDVWSGKTYVTFR GHYEHVNCCWFSSQDQELYTGGNDRQILVWSPARLIPNEDASPAEDQDNWSD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Potri.014G016100 [exp]	0	1
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.003G063700 [exp]	1.41	0.8872
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	1.41	0.8915
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	5.47	0.8683
AT5G50410			unknown protein		Potri.012G097500 [exp]	9.16	0.8326
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	11.22	0.8050
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Potri.014G192500 [exp]	11.66	0.8257
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	12.04	0.8338
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.012G073700 [exp]	12.16	0.8432	CCSPK5.3
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050500 [exp]	13.67	0.8186
AT5G06810			Mitochondrial transcription te...		Potri.016G048300 [exp]	14.69	0.7983

Compare expression of checked genes

Potri.014G016100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.