Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01400 556 / 0 ARM repeat superfamily protein (.1) AT5G58680 478 / 3e-170 ARM repeat superfamily protein (.1) AT4G16490 246 / 1e-77 ARM repeat superfamily protein (.1) AT2G23140 252 / 7e-77 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 232 / 3e-70 ARM repeat superfamily protein (.1) AT3G54790 231 / 7e-70 ARM repeat superfamily protein (.1.2) AT1G23030 208 / 9e-62 PUB11 ARM repeat superfamily protein (.1) AT1G71020 202 / 6e-61 ARM repeat superfamily protein (.1.2) AT3G54850 206 / 8e-61 ATPUB14 plant U-box 14 (.1) AT3G46510 197 / 2e-57 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G118800 [exp] 582 / 0 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 264 / 2e-81 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 263 / 4e-81 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G225400 [exp] 259 / 1e-79 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 258 / 1e-79 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.016G010800 [exp] 238 / 2e-74 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.006G015100 [exp] 234 / 6e-73 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 211 / 1e-62 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.010G113900 [exp] 209 / 3e-62 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007738 [exp] 541 / 0 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10018684 [exp] 327 / 2e-112 AT3G01400 358 / 2e-124 ARM repeat superfamily protein (.1) Lus10039047 [exp] 261 / 1e-83 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10024899 [exp] 261 / 1e-80 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 254 / 3e-76 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 249 / 7e-76 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 251 / 6e-75 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10010499 [exp] 236 / 3e-73 AT4G16490 608 / 0.0 ARM repeat superfamily protein (.1) Lus10016016 [exp] 215 / 4e-64 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10012260 [exp] 215 / 5e-64 AT5G42340 695 / 0.0 Plant U-Box 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.014G016400.3 pacid=42762477 polypeptide=Potri.014G016400.3.p locus=Potri.014G016400 ID=Potri.014G016400.3.v4.1 annot-version=v4.1 ATGGAGAAGGAGAATTCTGGGAGTTTCAACTATACGGGGAGGAGCTTCAGTAAATTGAGTGTTAATGACGATTCCTCAGCTTTCAGTGACTGTAACAGCG ACAGATCAGGGGAGTTCCAAACGGCGTCGTCTCAAAATCGATTGTTATTACTAGCCTGCGCAGCGGAGAATCCCGATGATCTAATTCGCCAGCTGGTATC GGATCTCGAGTCCTGTTCGATTGACGAGCAAAAACAAGCAGCCATGGAGATCAGGCTCCTCGCCAAGAACAAACCAGAGGATCGCCTCAAAATCGCCAAA GCTGGTGCAATTAAGCCCTTAATTTCGCTAATTTCATCGTCTGATTCTCAGCTTCAAGAGTACGGTGTCACTGCGATTTTGAATCTGTCACTCTGTGACG AGAATAAAGAGTTGATAGCTTCATCAGGCGCGATCAAACCATTAGTTAGGGCTCTGAGAACCGGTACACCGACGGCGAAAGAAAACGCTGCGTGCGCTCT ACTTCGTTTATCACAAATGGAAGAGAATAAAGTCGCAATCGGCCGGTCAGGAGCGATTCCATTGCTAGTAAACCTCCTCGAAACCGGAGCATTTCGAGGG AAAAAAGACGCAGCAACTGCTCTATATTCGTTATGTTCGGCCAAGGAAAATAAAATCAGGGCTGTCCAAGCTGGGATAATGAAACCACTGGTGGAATTAA TGGCTGATTTTGGGTCTAACATGGTGGATAAGTCAGCGTTTGTTTTGAGCCTGTTGATTACGGTTCCTGAAGCTAAAACCGCTGTTGTTGAAGAAGCAGG GATTCCAGTTCTGGTAGAAATTATTGAAGTCGGGTCGCAGAGGCAAAAGGAGATCGCGGTGTCGATATTGTTGCAGATTTGTGAAGATAATCTAGTGTTT CGAGCTATGGTGGCTCGAGAAGGAGCGATTCCGGCGTTGGTGGCTTTGACACAGTCCGGCACCAATCGCGCCAAGCAGAAGGCGGAGACATTGATCGATC TTCTACGGCAACCGAGATCCAGTAACGCCGCCGCTGCCAGAACGTCAGAGGTGTTAGGATAA
AA sequence Show only first row Show all	>Potri.014G016400.3 pacid=42762477 polypeptide=Potri.014G016400.3.p locus=Potri.014G016400 ID=Potri.014G016400.3.v4.1 annot-version=v4.1 MEKENSGSFNYTGRSFSKLSVNDDSSAFSDCNSDRSGEFQTASSQNRLLLLACAAENPDDLIRQLVSDLESCSIDEQKQAAMEIRLLAKNKPEDRLKIAK AGAIKPLISLISSSDSQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALRTGTPTAKENAACALLRLSQMEENKVAIGRSGAIPLLVNLLETGAFRG KKDAATALYSLCSAKENKIRAVQAGIMKPLVELMADFGSNMVDKSAFVLSLLITVPEAKTAVVEEAGIPVLVEIIEVGSQRQKEIAVSILLQICEDNLVF RAMVAREGAIPALVALTQSGTNRAKQKAETLIDLLRQPRSSNAAAARTSEVLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01400			ARM repeat superfamily protein...		Potri.014G016400 [exp]	0	1
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025566 [exp]	4.58	0.8597
AT5G18470			Curculin-like (mannose-binding...		Potri.001G437875 [exp]	4.58	0.8328
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.004G206100 [exp]	11.48	0.8462
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.002G248600 [exp]	11.61	0.7903
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025632 [exp]	13.11	0.8532
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385900 [exp]	13.41	0.8342
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.011G156200 [exp]	14.69	0.8335
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385400 [exp]	20.19	0.8309
AT1G30090			Galactose oxidase/kelch repeat...		Potri.006G193800 [exp]	20.97	0.8220
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Potri.017G082000 [exp]	25.92	0.7914

Compare expression of checked genes

Potri.014G016400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.