Plant FIBer expression Database

Pt-ACA1.1 (Potri.014G016600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ACA1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27770 1687 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2)
AT4G37640 1605 / 0 ACA2 calcium ATPase 2 (.1)
AT2G22950 1583 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1)
AT3G57330 1258 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1)
AT2G41560 1248 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
AT4G29900 901 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
AT5G57110 881 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2)
AT3G21180 863 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
AT3G63380 772 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
AT3G22910 717 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G055500
[exp]
1613 / 0 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1)
Potri.001G020600
[exp]
1254 / 0 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Potri.006G046500
[exp]
1253 / 0 AT3G57330 1451 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1)
Potri.016G043100
[exp]
1248 / 0 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Potri.003G204000
[exp]
1214 / 0 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Potri.018G139800
[exp]
907 / 0 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
Potri.006G072900
[exp]
893 / 0 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
Potri.010G250800
[exp]
869 / 0 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
Potri.008G008100
[exp]
869 / 0 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018687
[exp]
1730 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2)
Lus10011522
[exp]
1583 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1)
Lus10019300
[exp]
1502 / 0 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1)
Lus10025199
[exp]
1477 / 0 AT4G37640 1591 / 0.0 calcium ATPase 2 (.1)
Lus10016366
[exp]
1261 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Lus10035439
[exp]
1256 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Lus10042040
[exp]
1238 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1)
Lus10031053
[exp]
1218 / 0 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Lus10007736
[exp]
963 / 0 AT1G27770 1528 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2)
Lus10001428
[exp]
887 / 0 AT4G29900 1593 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00122 E1-E2_ATPase E1-E2 ATPase
PF00689 Cation_ATPase_C Cation transporting ATPase, C-terminus
PF00690 Cation_ATPase_N Cation transporter/ATPase, N-terminus
CL0137 HAD PF00702 Hydrolase haloacid dehalogenase-like hydrolase
CL0137 PF12515 CaATP_NAI Ca2+-ATPase N terminal autoinhibitory domain
Representative CDS sequence
>Potri.014G016600.5 pacid=42762916 polypeptide=Potri.014G016600.5.p locus=Potri.014G016600 ID=Potri.014G016600.5.v4.1 annot-version=v4.1
ATGGAGAACTACTTGAATGAGAACTTCGGTGACGTGAAGGCTAAGAACTCATCGGATGAAGCGTTGCAGAGATGGAGGAAACTTTGTTGGTTAGTTAAGA
ATCGCAAAAGGAGGTTTCGTTTCACTGCTAATCTCTCTAAACGATTTGAAGCTGAGGCTATCCGTCGATCCAATCAGGAGAAGCTTAGAGTTGCTGTCTT
GGTTTCAAAAGCTGCTCTTCAGTTTATACATTGTTTAAATTTGTCTAGTGATTACGTTGTACCTAAGGAGGTCGAGGAAGCTGGTTTTCAAATTTGTGCG
GATGAGTTGGGTTCCATTGTTGAAGGTCATGATGTTAAGAAACTGAAAATTCACGGTGAGGTGGAGGGTATTGCTGAGAAGCTCTCCACATCAATCAACG
ATGGGATTTCTACTTCTGAGGATTTAGTAAATGGAAGGAAGGAAATTTATGGGATTAATAAGTTTACTGAAAGCCCGCCTCGAGGTTTCTTGGTTTTTGT
GTGGGAAGCCCTTCAAGATATGACCCTTATGATCCTTGGTGTTTGTGCTCTTGTCTCTCTTATTGTTGGCATAGCTATGGAAGGATGGCCAAAAGGTTCC
CACGATGGACTTGGAATTGTTGCGAGCATTCTGCTTGTTGTGTTTGTCACTGCCACAAGTGATTATAAGCAATCTCTGCAGTTCAAAGATTTGGACAGGG
AGAAAAAGAAGATTACAGTTCAGGTTACCAGAAATGCTGTGAGGCAGAAGATCTCAATATACGATCTACTTCCTGGTGATATTGTTCATCTTTTTATTGG
AGATCAGGTTCCAGCTGATGGACTTTTTGTTTCAGGGTTTTCTGTGTTAATAAATGAATCAAGTTTAACAGGAGAGAGTGAACCAGTTAATGTGAATGCT
GCGAATCCTTTTCTCCTTTCTGGAACCAAAGTTCAGGATGGGTCGTGTAAAATGCTTGTGACCACTGTTGGAATGAGAACACAATGGGGTAAGCTGATGG
CTACTCTCAGTGAAGGAGGAGACGATGAGACCCCATTGCAGGTAAAACTGAATGGAGTAGCGACTATCATAGGAAAAATAGGCCTGTTTTTTGCTGTTGT
AACATTTGCTGTCCTGGTACAAGGATTATGTAACCGTAAGCTTCGAGAAGGAACCCACTGGATCTGGTCTGGAGATGATGCCAGGGAAATGTTGGAGTTT
TTTGCCGTTGCTGTTACAATTGTTGTAGTTGCAGTTCCCGAGGGGCTGCCATTGGCTGTGACTCTGAGTCTTGCTTTTGCCATGAAGAAAATGATGAATG
ATAAAGCACTTGTACGCAATCTCGCTGCTTGTGAGACAATGGGATCTAGCACAACTATCTGTAGTGACAAAACTGGGACTCTAACAACTAACCACATGAC
TGTTGTAAAAGCATGCGTTTCTGGTGAAACTAGGGAAGTGGGCAGCTCTGAGAGCACTACTTCTTTTGGATCAGCAATTCCCGATTTAGCGAAGAGTGTT
TTACTTGAATCAATATTTAACAACACTGGGGGAGAAGTTGTTGTCAATGAGGAAAGGAAAGTTCAGATACTGGGAACTCCCACTGAAACTGCTCTTTTAG
AGTTTGGACTGTTACTAGGTGGAGATTCCCGACAAAAACAAGAGAAATCAAAAATTGTGAAGGTTGAACCATTCAACTCTACAAAGAAGCGAATGGGGGT
GGTTATAGAGCTCCCTAATGGAGGTTTCAGGGCACACTGCAAGGGTGCTTCTGAAATAGTTTTAGCTGCATGTGATAAAGTTATAGACTCAAATGGTGTG
GTTGTTCCCCTTGATGAAGCATCCATCAATCATTTAAACGATACAATTGAAAGGTTTGCTAGTGAATCCCTTAGAACTCTTTGCCTTGCGTACCTGGAAA
TAGGAAATGAATACTCTGACGAAAGCCCTATTCCTTCCAAGGGTTACACTTGCATAGCTATTGTGGGTATCAAAGACCCAGTACGCCCTGGTGTCAAGGA
GTCTGTTGCTATCTGTAGGTCTGCTGGAATTGTTGTTCGGATGGTAACCGGAGACAACTTAACCACTGCAAAGGCTATTGCTAGAGAATGTGGGATTTTG
ACTGATGATGGCATAGCAATTGAAGGACCAGCATTTCGGGAAAAGAGTGAAGAGGAATTGCAAGAACTTATTCCAAAAATTCAGGTAATGGCTCGATCAT
CTCCATTGGATAAGCATGCCCTTGTGAGGCACCTACGGACAACTTTTCAGGAAGTGGTTGCAGTGACTGGTGATGGTACAAATGATGCTCCAGCACTTCA
TGAAGCAGACATTGGACTTGCAATGGGCATTGCTGGGACTGAGGTGGCCAAAGAGAGTGCTGATGTCATAATTCTGGATGATAACTTCTCCACAATTGTG
ACGGTGGCAAAATGGGGACGTTCTGTTTATATAAACATTCAAAAATTTGTTCAGTTTCAACTGACAGTCAACGTGGTTGCCTTGATTGTCAACTTCTCCT
CAGCCTGTTTGACAGGAAATGCTCCCCTAACAGCCGTTCAGCTTCTCTGGGTCAATATGATCATGGATACTTTGGGAGCACTTGCATTAGCCACAGAACC
TCCAAATGATGACTTGATGAAGAGATCACCCGTTGGAAGGAAAGGAAACTTCATCAGTAATGTAATGTGGAGGAATATTTTGGGGCAGTCCTTGTACCAA
TTTGTTGTTATATGGTACCTTCAGACGAGAGGAAAAGCAGTTTTTCGAATTGATGGGCCAGATTCTGATTTGATACTGAACACGCTCATTTTTAACTCAT
TTGTCTTTTGTCAGGTTTTCAATGAGATCAGCTCCAGAGAAATGGAAAAGATAAACGTGTTCAAAGGCATACTGAAAAACTATGTGTTTGTGTCTGTGCT
CGCCTGCACTGCCTTTTTCCAAATTATAATTGTTGAATTCCTGGGTACATTCGCGAACACATCTCCTCTCAGCTGGCAGCAGTGGTTTGTCAGTGTCTTC
TTTGGATTCCTTGGCATGCCAATCGCAGCTGCTTTGAAGATGATTCCTGTGGTTTCAAACTGA
AA sequence
>Potri.014G016600.5 pacid=42762916 polypeptide=Potri.014G016600.5.p locus=Potri.014G016600 ID=Potri.014G016600.5.v4.1 annot-version=v4.1
MENYLNENFGDVKAKNSSDEALQRWRKLCWLVKNRKRRFRFTANLSKRFEAEAIRRSNQEKLRVAVLVSKAALQFIHCLNLSSDYVVPKEVEEAGFQICA
DELGSIVEGHDVKKLKIHGEVEGIAEKLSTSINDGISTSEDLVNGRKEIYGINKFTESPPRGFLVFVWEALQDMTLMILGVCALVSLIVGIAMEGWPKGS
HDGLGIVASILLVVFVTATSDYKQSLQFKDLDREKKKITVQVTRNAVRQKISIYDLLPGDIVHLFIGDQVPADGLFVSGFSVLINESSLTGESEPVNVNA
ANPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLCNRKLREGTHWIWSGDDAREMLEF
FAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSSTTICSDKTGTLTTNHMTVVKACVSGETREVGSSESTTSFGSAIPDLAKSV
LLESIFNNTGGEVVVNEERKVQILGTPTETALLEFGLLLGGDSRQKQEKSKIVKVEPFNSTKKRMGVVIELPNGGFRAHCKGASEIVLAACDKVIDSNGV
VVPLDEASINHLNDTIERFASESLRTLCLAYLEIGNEYSDESPIPSKGYTCIAIVGIKDPVRPGVKESVAICRSAGIVVRMVTGDNLTTAKAIARECGIL
TDDGIAIEGPAFREKSEEELQELIPKIQVMARSSPLDKHALVRHLRTTFQEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIV
TVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRKGNFISNVMWRNILGQSLYQ
FVVIWYLQTRGKAVFRIDGPDSDLILNTLIFNSFVFCQVFNEISSREMEKINVFKGILKNYVFVSVLACTAFFQIIIVEFLGTFANTSPLSWQQWFVSVF
FGFLGMPIAAALKMIPVVSN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G27770 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, aut... Potri.014G016600
[exp]
0 1 Pt-ACA1.1
AT5G45290 RING/U-box superfamily protein... Potri.014G053500
[exp]
1.00 0.8358
AT5G54650 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homo... Potri.011G131700
[exp]
1.41 0.8334
AT3G03050 RHD7, ATCSLD3, ... ROOT HAIR DEFECTIVE 7, KOJAK, ... Potri.019G049700
[exp]
2.82 0.8031 PtrCSLD1,CESA3.2
AT1G29690 CAD1 constitutively activated cell ... Potri.011G075500
[exp]
4.24 0.8015
AT3G11760 unknown protein Potri.018G027200
[exp]
4.89 0.8180
AT5G18150 Methyltransferase-related prot... Potri.019G035000
[exp]
5.47 0.8252
AT5G17680 disease resistance protein (TI... Potri.017G104301
[exp]
5.91 0.8159
AT5G63770 ATDGK2 diacylglycerol kinase 2 (.1.2) Potri.005G070900
[exp]
5.91 0.8136
AT5G50180 Protein kinase superfamily pro... Potri.001G343900
[exp]
7.07 0.7514
AT2G04305 Magnesium transporter CorA-lik... Potri.001G285300
[exp]
7.41 0.7962

Potri.014G016600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.