Plant FIBer expression Database

Potri.014G016900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27752 705 / 0 Ubiquitin system component Cue protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007753
[exp]
856 / 0 AT1G27752 793 / 0.0 Ubiquitin system component Cue protein (.1.2)
Lus10018693
[exp]
853 / 0 AT1G27752 788 / 0.0 Ubiquitin system component Cue protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0214 UBA PF02845 CUE CUE domain
Representative CDS sequence
>Potri.014G016900.1 pacid=42763346 polypeptide=Potri.014G016900.1.p locus=Potri.014G016900 ID=Potri.014G016900.1.v4.1 annot-version=v4.1
ATGTCACGCCGTTACTCTCAAAACAACAACAGGCAGCAACAACAAGAATGGAGAAGCAATAACAGCAGTAATTTCTCCAAACCACAAACCAAATTCGTCC
CCAAAAATCAAAACCCTAACTCCAACCCTACTCTATCCGATTCTCTAAGGCAATCTCTCTCAAGTCAATCCGATGCCGCCGCCGCCGCCGCTCCAGCATC
GAGCGGTAATATGGGCGCAGGGGAGTCGTCGAGTAGGATTCAAATGAGAGATGACGGGGCGTGGATGTCTAGAAAAGCTGTAGCTGGTGTTCAGGGCGGT
GGCAAATTTGTAACTTACTTGCCGCAGGATGAGGCTGTGGCTGCGGGACTCGGTGCCGATGAAGGAGGGTTGGATCCAGTAGAATCACAGAGAGTTGTTG
ATCTTTTGAGTAGAGAATTGTCTCGGTTACTCAAGTTGAAACCTAAAGAATTTTGGAAAGAAGTGGCTAGTGATGTGTCGTTGCATGATTTTCTGGATAG
CTTCTTGAAATTTAGGAGCAGATGGTATGATTTCCCACATCGTGGAGTCAAAGGAATTGTTGCAGGGGTAATTGTTGGAGAGCTTGACTTATGTCGCCGT
GTTTTCATGGTATTGTATCGCATATCTTCCAATAGGGCTCCGGGTGTCGAGGCCGCTGAAAGCTTGAACTCAAAGGATCATGCTGTCCTCTTGCAGGAAA
AGAAGTTACTGGACTTGCCTAAGTTGTTGGATATATGTTCCATTTACGGTCATGAAAATGAAGAACTGACCGGATTGTTGGTCAAGAATGCCTTGAAAGC
CCAGCCTTGGCTCCATGATGATCTGGCCAATTTAATGACCCATTTCCTGGGCATCATTCACACAATGCATCAACGTTGCATGTCATCTTTGGAGGTATTA
TTATCCGCTGGAAGCCATGAAGACCATCGATCCAGCCCGCTTCTAACTGATTACTTAGAAGTGATGGACTTTATAAATGATGCAATTGTCTCCATGGATG
CTTTTGTTACAGCATATGAATCAGCAGCTGTGTTCTTCTCGTGCCCTGTTGAAATGAGTCATGGGAATGAGGAAATGCTGATCACCCTTGCAAGATTGCA
TGATACTTTAATTCCAGCTTTGCAGCGAGGCTTTCGAGTCATCTTGACAGGAGGGGATGATAGAATGATATTGAATGTTGCGGTTAGTTTAAAGATGTTG
TCAATGAGGCTGTCCAAATTTGGATGGAAATTGTTGGACACTTGCTATTTAAGTGATCGAGTTTTTGAAGATCACCTTCCCATTCCCCATGTAACAAAGA
TGTTTCCTGCAAAAGTAGAGGATCCCGTCATAAGGACAGACATATTGATTCAGACTTTTAGGGAGATCAATGGAGTTCTCCTTGCTGCTCAGGAAAACCA
GAGCAAAGTTTCATTCCTTCAGAATCTTGATAGGAATCATCATATAATGAGTAGGCTTCAGAGTTTACAAAATGCCGGGTGGATTTTCATGGATGATGAA
CAGCTCCAGTATTTATCTGGGATAATGGCTTCTAATCTGAAAGGCACCATTAAGGACTCACCTGCTTTTCCAACTGCCACTGCGAGCAACAAAGTACAGA
TGGGTGAAGATGTTGCCATCATGGAGTCCAAAATCAGTCAAATAAAGGACCTTTTTCCTGACTATGGTAAAGGGTTCCTAGCTGCTTGTCTTGAAGCTTA
TAATCATAATCCCGAGGAGGTCATTCAGAGGATACTAGAGGGGACCCTCCATGAAGATCTAAGGTGTTTGGATACTTCATCGGAGACGATGCCACTGCCC
AAAGCTGCTTCAACTGTGGGCAAGAAAGATAAAGGAAAAGGAAAGTTGGTTGAATCTACACTTCCTTCAACAACATCACTGCACTCTGTTAATCCAGTGG
TCCCAGTGGAGCAGCGACAAGTTGAGGGTCCCTCTGTTTCGTCATCATCTACAACTGGAAGGTTTGTCAGGAAGCCTAATGACATCCCTGGTCACTACAC
CACTGACACCAGAGATCACAAGGATACTGCAAGGATGGCTGCTCTAATTTCACAGTATGAATACGAAGATGAGTATGACGACTCCTTTGATGATCTGGGT
TTCAGTGTTGCCGATTCCGGGGTGGAGGAGAATGAACTATTAGGTAACAGAATAAACTCTAATTCAGGGATATCATCAGGGACCAAAACTGAAACCTCTG
CTCAAAACTCTCCTAATACTAAATGGGGCTCCAGGAAAAAGCCGCAATATTATGTGAAGGATGGAAAGAACTATAGTTACAAGGTTGCAGGTTCAGTCGC
GGTGGCAAATGCTAATGAAGCTTCTCTTATTAATCAAGTACACGGAGAACAAATTCATGGTCTTGGACGTGGTGGTAATATTCCCCTAGGTGCAACTAAA
AAGTTGGCTGAGTATCAAGAGAAGGATCGGGACCAGTCTGATGAACCCGAGATGGAAGGGAGAGGGAATTACAGGGGTCGGCCCTGGGGCAGAGGAAGTA
GGGGAGGAGGAAGGCTGAGGGAGTCAAATGATGTCCAAGACAACCAGTCTGATGGCTCTGAGATTCAAGGGAGAGAAAGTACTCCTAACCATAGAGGTAG
AGGTCGGGGAAGAGGAAGTAATCATAACTACAGGAAGGATAGAGCCATGAATAAGCACTTCTCTGGATTGTCTGGTTTCTAA
AA sequence
>Potri.014G016900.1 pacid=42763346 polypeptide=Potri.014G016900.1.p locus=Potri.014G016900 ID=Potri.014G016900.1.v4.1 annot-version=v4.1
MSRRYSQNNNRQQQQEWRSNNSSNFSKPQTKFVPKNQNPNSNPTLSDSLRQSLSSQSDAAAAAAPASSGNMGAGESSSRIQMRDDGAWMSRKAVAGVQGG
GKFVTYLPQDEAVAAGLGADEGGLDPVESQRVVDLLSRELSRLLKLKPKEFWKEVASDVSLHDFLDSFLKFRSRWYDFPHRGVKGIVAGVIVGELDLCRR
VFMVLYRISSNRAPGVEAAESLNSKDHAVLLQEKKLLDLPKLLDICSIYGHENEELTGLLVKNALKAQPWLHDDLANLMTHFLGIIHTMHQRCMSSLEVL
LSAGSHEDHRSSPLLTDYLEVMDFINDAIVSMDAFVTAYESAAVFFSCPVEMSHGNEEMLITLARLHDTLIPALQRGFRVILTGGDDRMILNVAVSLKML
SMRLSKFGWKLLDTCYLSDRVFEDHLPIPHVTKMFPAKVEDPVIRTDILIQTFREINGVLLAAQENQSKVSFLQNLDRNHHIMSRLQSLQNAGWIFMDDE
QLQYLSGIMASNLKGTIKDSPAFPTATASNKVQMGEDVAIMESKISQIKDLFPDYGKGFLAACLEAYNHNPEEVIQRILEGTLHEDLRCLDTSSETMPLP
KAASTVGKKDKGKGKLVESTLPSTTSLHSVNPVVPVEQRQVEGPSVSSSSTTGRFVRKPNDIPGHYTTDTRDHKDTARMAALISQYEYEDEYDDSFDDLG
FSVADSGVEENELLGNRINSNSGISSGTKTETSAQNSPNTKWGSRKKPQYYVKDGKNYSYKVAGSVAVANANEASLINQVHGEQIHGLGRGGNIPLGATK
KLAEYQEKDRDQSDEPEMEGRGNYRGRPWGRGSRGGGRLRESNDVQDNQSDGSEIQGRESTPNHRGRGRGRGSNHNYRKDRAMNKHFSGLSGF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G27752 Ubiquitin system component Cue... Potri.014G016900
[exp]
0 1
AT1G28280 VQ motif-containing protein (.... Potri.011G118200
[exp]
2.44 0.8209
AT4G36870 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodom... Potri.005G129500
[exp]
6.70 0.7415
AT3G27330 zinc finger (C3HC4-type RING f... Potri.001G336766
[exp]
12.16 0.8065
AT4G34215 Domain of unknown function (DU... Potri.014G022700
[exp]
15.87 0.7959
Potri.019G037300
[exp]
15.96 0.6628
AT3G11690 unknown protein Potri.006G200100
[exp]
17.49 0.7736
AT5G54730 ATATG18F ARABIDOPSIS THALIANA HOMOLOG O... Potri.011G132700
[exp]
18.89 0.7405
AT4G02830 unknown protein Potri.005G208800
[exp]
20.04 0.7876
AT5G01960 RING/U-box superfamily protein... Potri.013G160000
[exp]
20.39 0.6624
AT5G65110 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) Potri.005G077600
[exp]
20.71 0.7006

Potri.014G016900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.