Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27750 608 / 0 nucleic acid binding (.1) AT2G43410 52 / 3e-06 FPA RNA binding (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018694 [exp] 1141 / 0 AT1G27750 516 / 2e-163 nucleic acid binding (.1) Lus10007756 [exp] 154 / 2e-41 AT1G27750 81 / 3e-17 nucleic acid binding (.1) Lus10007734 [exp] 110 / 5e-24 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10007419 [exp] 45 / 0.0005 AT2G43410 627 / 0.0 RNA binding (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0616 [poplar] [flax] SPOC PF07744 [poplar] [flax] SPOC SPOC domain
Representative CDS sequence Show only first row Show all	>Potri.014G017000.1 pacid=42764208 polypeptide=Potri.014G017000.1.p locus=Potri.014G017000 ID=Potri.014G017000.1.v4.1 annot-version=v4.1 ATGGACGCTGCAGAGCAGCCACTCAAGAAGCGGAAGCTCTACGAGCAACAACCAGAAGAACCTCCACCAAAAACTCTGGACGAGTCACCTACCACTTTAG CACCACCACCACCACCACCACTGTCTCAAGAAGAAATTAACGCGAGACGGAGAAACAGAGATGAGATTAAGAGCGTCTACGAAACTTACAAGCGTCTCAA GTTTTTTGTTTCTCAGAAAGAAGGACGTCACATGCCTGACCTCGAACAATCTTATCTCGCACTCATTACTGCTTCAAGAGGTTGTACTAGTGTGCAACGA ATTGTAGCTGATCTTATTCCTCGATATGCTTCACACTGTCCGACTGCTCTTGAAGCAGCGACTAAAGTTGTAATCAACATGCATAACTGGAGCTTGGCAG TGATAAATAGAGGAGAGGATTTTGATGGTGTTGCAATGGGGACAGCTAAAGCATGTATTTTTGGTTTAGTTGATATCTGTCGAACTGCTTCTTTGGAAGC TCCAACATCAGCTGTTATTAGAGGCATTTGCTCTGCGGTTTTTCAGAATGTGTTGTCATTCTTTGTGTCATCTTTCGAGGGTAAGGATATCTTTCAGATT GTTGATAAGGAAACTTTGAAGATACAAGATGATCTCAAGATCTTTTCGGAGTTGAAGCAAAAGTTTGATGATGAGGATGGAATTTCGTTGGTTAAATTGT CCAAGTTGTGTGCCTTAAGTATGCTCTGGATTTTATTTTCTTGCCCTAAAGATTTGTTTGCTGCCTGTTTTGAGCTCTTTAAATCAACTGTTCCAGAAAG AGTCCAAGAAAGAAACTTTTTTCTTAGTCAGGTGACCAGCATTATAGCTGATGATGCTGTGCCTCTGGCTAATGCAAGTGATGGAACTACCTCTCGTGAA GGATCTGTTGGACCAAGTGCCAAAAGCTATGATGTTAGTGGCGAGTTGCCTTTAGATGGTAACCATGTTTCAGAAGATGCATCTTCACCAAAGAACTGCT TGTTGAGACTGGTCCTTGGCAATAACGCATCTTTGAGAAGCTGGATGTTCTCAAAGTACAAGAAGTTGTGCAACATGACATCTTTTATAGCTGCATCAGA CATTAGATCTGCTCTAGAAGGAATCTGTAAATCATTTGCAGAATTCAATAAACTAGATGACAGTCAAATTGACAGCGACGGGGATGATTCTGATCCATCA AAATTTGTAAATCGACAATTTCCGGTTCCTAGGATGTCTAATGAACATGAAGTCTCTGGTGAACCAGCTGGTACTGGTCATCATAAAGGAGGGTCAAGGT CCATGGATTTCGAGATGAATCACCTTGGAGACTCTTCACATGGCAGGTCTTCCATGCCTAGGGATCTATCAAACCAATCTGTGCTTTCACCTGCTACAAG AACTCCATTAGACTTCAGGAGCAATTCATTTGATGGTAGAAACTTTAATGTCCATGTGGGCAAAAATCCAGCTTCAAATATGGAGTTTAGTTTACCTGCC TTGAGATCTCCCAGTGGAGGCATAAGTAATTCTTTTTCTCCTAAACATCATTTGGCAGCACCATATGGTTCCATAGCTGAAACTGTTTGGTTCTGCGATG GGGACCCAGCTGCAATGGATGTTTTTTCTGCTTCTAGACAGCTTTGGTTGGGTTCTTTAGGTCCAGATGCATCTGAAGCTCATATGAGGTATGAGCTTGA GAGGTTTGGTCCTATAGAACAATTTGTCTTCTTTCCAGTCAAAGGATTTGCCTTGATTGAGTATAGGAACATATTTGATGCCATTAGGGCTCGGGAGTAT TTGCGTACCCATTTCCCTTGGTGGATCAAATTCATGGATATAGGACTGGGAGCCAGGGGTGCTATGAATGGTGTTGCGGTTGGCTCCAGTTGTCATGTTT ATGTTGGACATATTTCAAGCCAATGGGCTAGGGATGAAATTCTGCATGAATCAAGGAAAGTGATTTTCAAGGGGCCACGCATGGTCACTGATCTCACCAA TGAAGGAGCAGTACTGATGGAGTTTGAAACTCCTGAAGAAGCAACTGCTGTGATGGTACATCTCAGGCTGCATCGTAAAGGACAACTCCACCACGTGCCT GCTTTGAACGAGGGATCAGCTAATGCTGTGTTGCCTCAGTTAGATGGTACAAGATCAGCATCAGCTGCTATCCATGCTGACATTAGAACCAATCACTCAG TTAGCATGTTCAATAGTGCAACAGAATCGCCTCGTACCCAAAATGTACCCCAGAGTCCTGCTGACAACTCTAGGACAAGGATGTCTAATTTATCTTCCTT ACTTGCTTCATTGCGTACAAAATATAATATTAATCAAAACCCAAATTATTTTGACAACTATGTACCTGGAAGCAGCATGGCTCCTTCTTCGAGGGATGCT GATCGAGAGCCATCAAGCACACTTTGGATTTGTCTTCCAAATGTCAACTCCCCTTCCCTTAATGATGATGAGCTGATGGCTGTTTGCAATCTTGCTATTG CCAATGTAGGGTCTATAGTCAAATTGACACGAGCAAATATGCATATAGGGTGTGGTTGGTTTCTTGAATGCACCAACGTTGATGCTGCAATCACTGTTTT GAAAAATCTCCGCAGTTGTCATGGGACATTCTTTCAGATTGAGTTCAGTCAGCCAGAAAAGAATGCTGCCGCATTCTCAATCAAGCCTGAAGGTGGCTCC ACAGAGCTTGTATCCCCACAAATAAAATCAGAGAATCACGCGACTCCTGTACAAGGTGTACATGCATTTGGGGTGGTGGATCCTTCGCCAGGAGGTGGTC ATGCTGTTCCTGCTGCACCTGAACCGATGTGGATGTACAAGAACAATGAAATTGAGCTGCTCCAGCCACCTGTAAGCATTTCATGTGCTCCTACAGGAAC ACATGGACCACCAATACCGCCACCACAGCAATTCCAGCCACCTACATTTATGCGACCTGTTTACCTTCCTCCAAACAATTCATGGGATCCACGAGGCTTA AATCATGTTGCACTGAACCCAATCTCACCAGCAACAATGCCAAATAGCTTTCAAGGAAGCTCTGTTGCATCTCCTTTTATACCTGCTTCTGTTACTCCAC TAGCACAGGTACAGCGGGCTCCAGTGCAGCACTTGGACCAAATGTTTCCCAGATCTGCTGTACCACCAACTTTATCATCTATGCCACTTCAGCCTGAAAT ACCCCCACCATTGCCTCCATCTCCACCACCTGCTCCTCCTCCACCTAGTTCCCCACCTCCACCTCCACCTGTTGCAGAATCAACTGATGCAGAAAGTTCT GGAAACTCTATGTTATATCAGTGGCAGGGCACATTATGCAAAAGCGGGGTTCATTACTGTAAAATTTTTGCGCAAAGAGTGGATTCAGATATTTGCAAGT ATTCAGATGCCATGTCTGAACCTGCTGGATGGCCTGCTAAACTAGACATGACGAAACGCACAGTTTTTCGGCATGTAAAATCAACATTTACAAGTACCCC ACCACACAAAAGGGAAGTATGCCGATTGATCCCCTTGTCTGCAAACGACCAAAAGGGCTTTCAGGATTTCATATCATATTTGAAGCAGAGGGAATGTGCA GGAGTAATTAAAATCCCATCTGGGAAATCCATATGGACAAGGATTCTCTTCATCCTTCCCTACTCACAAGATACTTGTTCCATGCTCTCAATTGCCCCCG ATACATCAAACTGCCTGATTGGTTTAGTTTTGCCAAAAGAAACAAACTTCGACTGGGTTTAA
AA sequence Show only first row Show all	>Potri.014G017000.1 pacid=42764208 polypeptide=Potri.014G017000.1.p locus=Potri.014G017000 ID=Potri.014G017000.1.v4.1 annot-version=v4.1 MDAAEQPLKKRKLYEQQPEEPPPKTLDESPTTLAPPPPPPLSQEEINARRRNRDEIKSVYETYKRLKFFVSQKEGRHMPDLEQSYLALITASRGCTSVQR IVADLIPRYASHCPTALEAATKVVINMHNWSLAVINRGEDFDGVAMGTAKACIFGLVDICRTASLEAPTSAVIRGICSAVFQNVLSFFVSSFEGKDIFQI VDKETLKIQDDLKIFSELKQKFDDEDGISLVKLSKLCALSMLWILFSCPKDLFAACFELFKSTVPERVQERNFFLSQVTSIIADDAVPLANASDGTTSRE GSVGPSAKSYDVSGELPLDGNHVSEDASSPKNCLLRLVLGNNASLRSWMFSKYKKLCNMTSFIAASDIRSALEGICKSFAEFNKLDDSQIDSDGDDSDPS KFVNRQFPVPRMSNEHEVSGEPAGTGHHKGGSRSMDFEMNHLGDSSHGRSSMPRDLSNQSVLSPATRTPLDFRSNSFDGRNFNVHVGKNPASNMEFSLPA LRSPSGGISNSFSPKHHLAAPYGSIAETVWFCDGDPAAMDVFSASRQLWLGSLGPDASEAHMRYELERFGPIEQFVFFPVKGFALIEYRNIFDAIRAREY LRTHFPWWIKFMDIGLGARGAMNGVAVGSSCHVYVGHISSQWARDEILHESRKVIFKGPRMVTDLTNEGAVLMEFETPEEATAVMVHLRLHRKGQLHHVP ALNEGSANAVLPQLDGTRSASAAIHADIRTNHSVSMFNSATESPRTQNVPQSPADNSRTRMSNLSSLLASLRTKYNINQNPNYFDNYVPGSSMAPSSRDA DREPSSTLWICLPNVNSPSLNDDELMAVCNLAIANVGSIVKLTRANMHIGCGWFLECTNVDAAITVLKNLRSCHGTFFQIEFSQPEKNAAAFSIKPEGGS TELVSPQIKSENHATPVQGVHAFGVVDPSPGGGHAVPAAPEPMWMYKNNEIELLQPPVSISCAPTGTHGPPIPPPQQFQPPTFMRPVYLPPNNSWDPRGL NHVALNPISPATMPNSFQGSSVASPFIPASVTPLAQVQRAPVQHLDQMFPRSAVPPTLSSMPLQPEIPPPLPPSPPPAPPPPSSPPPPPPVAESTDAESS GNSMLYQWQGTLCKSGVHYCKIFAQRVDSDICKYSDAMSEPAGWPAKLDMTKRTVFRHVKSTFTSTPPHKREVCRLIPLSANDQKGFQDFISYLKQRECA GVIKIPSGKSIWTRILFILPYSQDTCSMLSIAPDTSNCLIGLVLPKETNFDWV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27750			nucleic acid binding (.1)		Potri.014G017000 [exp]	0	1
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.001G469500 [exp]	1.41	0.9271	Pt-VCS.1
AT5G08550		ILP1	increased level of polyploidy1...		Potri.008G002600 [exp]	1.41	0.9238
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	2.44	0.9211
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.003G154800 [exp]	3.31	0.9037
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	3.46	0.9189
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.005G180800 [exp]	5.91	0.9127	CHB904,CHB4.1
					Potri.009G040500 [exp]	8.48	0.8973
AT1G19480			DNA glycosylase superfamily pr...		Potri.002G035300 [exp]	8.71	0.8937
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Potri.015G008700 [exp]	9.48	0.8986
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	10.48	0.9049	Pt-RPB1.1

Compare expression of checked genes

Potri.014G017000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.