Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14760 180 / 1e-53 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G33880 173 / 9e-51 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT1G27740 164 / 1e-48 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT5G43175 152 / 3e-44 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G66470 99 / 2e-23 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1) AT5G37800 98 / 3e-23 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) AT2G24260 91 / 3e-20 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 89 / 5e-20 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 86 / 1e-18 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT3G21330 78 / 1e-15 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119200 [exp] 484 / 7e-172 AT4G33880 186 / 3e-55 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Potri.009G089000 [exp] 219 / 2e-68 AT2G14760 173 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.001G294300 [exp] 216 / 3e-67 AT4G33880 164 / 2e-47 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Potri.017G126800 [exp] 100 / 1e-23 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.004G088900 [exp] 99 / 2e-23 AT5G37800 199 / 7e-62 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.018G109500 [exp] 90 / 2e-19 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G186600 [exp] 89 / 2e-19 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.006G135600 [exp] 87 / 2e-18 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.007G044600 [exp] 82 / 8e-18 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001068 [exp] 176 / 4e-52 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 171 / 6e-50 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10017634 [exp] 95 / 4e-22 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1) Lus10033592 [exp] 94 / 1e-21 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10021846 [exp] 88 / 3e-19 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10033488 [exp] 80 / 3e-17 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014726 [exp] 79 / 3e-17 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 81 / 5e-17 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10015909 [exp] 81 / 6e-17 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10006587 [exp] 82 / 7e-17 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G017100.1 pacid=42763018 polypeptide=Potri.014G017100.1.p locus=Potri.014G017100 ID=Potri.014G017100.1.v4.1 annot-version=v4.1 ATGAATATGCAGACCATGGGAGATTTTCCTGATGGTGAATGGGACTTCAGCAGAATGTTCTCCATGGAAGAGCCTGATTTCACCCCGGAATTACTTGGTC AGTGTTCTTTTCCGCAGGAGAATGACGAAGGATTGCAATTTACAATCCCACCTGCAGCTTTCTTCCCTACACCTGAAGCCAACGTGAGCATGGCTGGGAA TGAGAGTTTGTTTTATTCTTGGAACGCTCTCAACCCCAATTTGCATTTTGATTCTCAAGAAAGTGGTAATAACAGTAATTGTAGCAGTGGTGTATTTCTT CCTTCTTCCAGCCATGAATCCTACTTCTTCAATGATTCTAACCGCATTCAGGCTGCTAACGATAACTCCATGTCCATGGATATTTCACTCATGGATGAGA AAACTATTGGCTTGTTTATGCCATTTTTTCCTGAAATTGCAATGGCAGAAACTGCCTGCATGAATGGGGATATGAGCAGTGACAAGATAGGAGATTTAGA CGATAATCTGCAGCCAGCTGCTAATACTGTTCTGGCCAAGGGATTGCAGCTCAAAAGGAAGCTTGATGTTCCAGAATCAAATACATTGGACGACATGAAG AAGAAACCTCGGATTACAAGAAATGTGCAAAAGAGCAAGAAGAGTGTACAGTCAAAGAAAAACCAAAGGTCCACTCCAAAAATTAGCAATGAAGAAGAAG AGAGTAATGCTGGACCAGATGGACAAAGCTCCAGCAGTTGCAGTTCAGAAGATGATAATGCCTCTAAGGATTCTGATTCCAAAGTTTCTGAAGTTCTCAG TTCCAGTGGCAAAACAAGAGCTAGTAGGGGAGCTGCTACAGATCCCCAGAGCCTTTATGCAAGGAAAAGGAGGGAGAGGATAAACGAGAGACTGAAAATC CTACAGCATATTGTCCCTAATGGAACCAAGGTTGATATCAGCACAATGCTAGAAGAGGCAGTCCATTACGTAAAGTTTTTGCAGCTTCAAATCAAGCTTT TGAGCTCGGATGATCTATGGATGTACGCACCTCTGGCTTACAGTGGAATAGATATTGGCCTCGACCAGAAGCTCTCTATGCTTCTATGA
AA sequence Show only first row Show all	>Potri.014G017100.1 pacid=42763018 polypeptide=Potri.014G017100.1.p locus=Potri.014G017100 ID=Potri.014G017100.1.v4.1 annot-version=v4.1 MNMQTMGDFPDGEWDFSRMFSMEEPDFTPELLGQCSFPQENDEGLQFTIPPAAFFPTPEANVSMAGNESLFYSWNALNPNLHFDSQESGNNSNCSSGVFL PSSSHESYFFNDSNRIQAANDNSMSMDISLMDEKTIGLFMPFFPEIAMAETACMNGDMSSDKIGDLDDNLQPAANTVLAKGLQLKRKLDVPESNTLDDMK KKPRITRNVQKSKKSVQSKKNQRSTPKISNEEEESNAGPDGQSSSSCSSEDDNASKDSDSKVSEVLSSSGKTRASRGAATDPQSLYARKRRERINERLKI LQHIVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPLAYSGIDIGLDQKLSMLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14760	bHLH	bHLH084	basic helix-loop-helix (bHLH) ...		Potri.014G017100 [exp]	0	1
AT5G49630		AAP6	amino acid permease 6 (.1)		Potri.006G236100 [exp]	11.40	0.8667
AT3G19920			unknown protein		Potri.007G073600 [exp]	12.48	0.8667
					Potri.008G053150 [exp]	13.49	0.8667
AT1G66920			Protein kinase superfamily pro...		Potri.012G003301 [exp]	18.70	0.7812
AT3G51020			unknown protein		Potri.002G011500 [exp]	20.19	0.7747
					Potri.006G017750 [exp]	26.60	0.8256
					Potri.003G109601 [exp]	38.45	0.7281
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.017G013200 [exp]	43.95	0.6410
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026100 [exp]	47.96	0.7893
					Potri.017G018200 [exp]	48.98	0.7258

Compare expression of checked genes

Potri.014G017100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.