Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APRT.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27450 277 / 3e-94 APRT, ATAPT1, APT1 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) AT4G22570 259 / 6e-88 APT3 adenine phosphoribosyl transferase 3 (.1) AT4G12440 250 / 2e-84 APT4 adenine phosphoribosyl transferase 4 (.1.2) AT5G11160 228 / 6e-76 APT5 adenine phosphoribosyltransferase 5 (.1) AT1G80050 223 / 1e-73 PHT1.1, ATAPT2, APT2 adenine phosphoribosyl transferase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G121400 [exp] 254 / 4e-86 AT4G22570 298 / 9e-105 adenine phosphoribosyl transferase 3 (.1) Potri.018G026200 [exp] 240 / 2e-80 AT5G11160 313 / 2e-110 adenine phosphoribosyltransferase 5 (.1) Potri.006G255900 [exp] 239 / 6e-80 AT5G11160 315 / 4e-111 adenine phosphoribosyltransferase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018695 [exp] 280 / 3e-96 AT1G27450 303 / 9e-107 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) Lus10007757 [exp] 280 / 4e-96 AT1G27450 303 / 1e-106 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) Lus10024612 [exp] 261 / 1e-88 AT4G22570 305 / 2e-107 adenine phosphoribosyl transferase 3 (.1) Lus10004344 [exp] 255 / 1e-86 AT4G22570 301 / 4e-106 adenine phosphoribosyl transferase 3 (.1) Lus10032249 [exp] 255 / 2e-86 AT4G12440 299 / 4e-105 adenine phosphoribosyl transferase 4 (.1.2) Lus10002924 [exp] 231 / 1e-76 AT5G11160 316 / 3e-111 adenine phosphoribosyltransferase 5 (.1) Lus10001497 [exp] 229 / 6e-76 AT5G11160 315 / 4e-111 adenine phosphoribosyltransferase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [poplar] [flax] PRTase-like PF00156 [poplar] [flax] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Potri.014G017200.2 pacid=42763022 polypeptide=Potri.014G017200.2.p locus=Potri.014G017200 ID=Potri.014G017200.2.v4.1 annot-version=v4.1 ATGCAAAGAAGTCTTCTGCTCCGTTGTTCAAATTCCATCTTTCGTCCTCCACCAAACTCTCATCGACTTCGACCACCGTCTCTGAAACGTCAGTCGGCTC CGATTGCAGCCTCCTCCGGTGCCCAATTACCTTTAACTTTCTCCCAGAATTACAGAACTGCCCCCAATCGCCTTCACTGCTCTGTGAGCGAGTCACAGTG GAAGCAAGATAGAGAAATGGCCACTGCAGATGAGCAGCAAGATCCTCGTATAGCCAGAATCTCCTCTGCTATAAGGGTCATCCCTGACTTCCCTAAACCA GGGATTATGTTTCAGGATATAACAACGTTGCTTCTTGATACAAAAGCGTTTAAGGATACTATAGATTTGTTTGTTGAGAGGTACAGAGATAAAAACATCT CTGTCGTTGCAGGTGTTGAAGCTAGGGGTTTTATATTTGGCCCTCCCATTGCACTGGCAATCGGAGCAAAATTTGTACCCATGAGGAAACCCAATAAGTT GCCTGGGGAGGTTATTTCGGAAGAGTACTCTTTGGAATATGGAACAGACAAAATGGAGATGCATGTGGGTGCAGTAGAAGCAGGAGAACATGCATTGGTA ATTGATGATCTCATTGCAACTGGTGGGACCTTATGTGCTGCAGTGAAACTACTCGAGCGTGTTGGGGTACATGTTGTCGAGTGTGCCTGTGTTATTGAAT TGTTAGGGCTGAAGGGACGGGAACGCCTAGGAGACAGACCGTTATTTGTCCTTGTAAACTCAACTTAG
AA sequence Show only first row Show all	>Potri.014G017200.2 pacid=42763022 polypeptide=Potri.014G017200.2.p locus=Potri.014G017200 ID=Potri.014G017200.2.v4.1 annot-version=v4.1 MQRSLLLRCSNSIFRPPPNSHRLRPPSLKRQSAPIAASSGAQLPLTFSQNYRTAPNRLHCSVSESQWKQDREMATADEQQDPRIARISSAIRVIPDFPKP GIMFQDITTLLLDTKAFKDTIDLFVERYRDKNISVVAGVEARGFIFGPPIALAIGAKFVPMRKPNKLPGEVISEEYSLEYGTDKMEMHVGAVEAGEHALV IDDLIATGGTLCAAVKLLERVGVHVVECACVIELLGLKGRERLGDRPLFVLVNST

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Potri.014G017200 [exp]	0	1	APRT.1
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.016G077200 [exp]	12.32	0.9011	UBQ1.3
AT5G02960			Ribosomal protein S12/S23 fami...		Potri.016G085800 [exp]	15.55	0.8998	Pt-RPS23.5
AT4G25740			RNA binding Plectin/S10 domain...		Potri.004G073500 [exp]	21.77	0.8964
AT3G59540			Ribosomal L38e protein family ...		Potri.007G131800 [exp]	25.09	0.8891
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.005G206300 [exp]	26.83	0.8836	Pt-RPS12.3
AT3G60770			Ribosomal protein S13/S15 (.1)		Potri.002G146800 [exp]	27.64	0.8932	RPS13.3
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.001G025300 [exp]	28.77	0.8860	Pt-UBI.5
AT1G15120			Ubiquinol-cytochrome C reducta...		Potri.005G190901 [exp]	31.08	0.8846
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Potri.018G087600 [exp]	35.32	0.8653	B5.1
AT5G24510			60S acidic ribosomal protein f...		Potri.012G021700 [exp]	35.72	0.8787

Compare expression of checked genes

Potri.014G017200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.