Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49940 196 / 3e-63 AS2 LBD38 LOB domain-containing protein 38 (.1) AT4G37540 195 / 5e-63 AS2 LBD39 LOB domain-containing protein 39 (.1) AT5G67420 196 / 7e-63 AS2 ASL39, LBD37 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) AT3G02550 164 / 3e-50 AS2 LBD41 LOB domain-containing protein 41 (.1) AT1G67100 161 / 9e-50 AS2 LBD40 LOB domain-containing protein 40 (.1) AT1G68510 155 / 4e-47 AS2 LBD42 LOB domain-containing protein 42 (.1) AT1G07900 58 / 2e-10 AS2 LBD1 LOB domain-containing protein 1 (.1) AT2G28500 57 / 1e-09 AS2 LBD11 LOB domain-containing protein 11 (.1) AT2G31310 48 / 5e-07 AS2 LBD14 LOB domain-containing protein 14 (.1) AT3G50510 47 / 2e-06 AS2 LBD28 LOB domain-containing protein 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119400 [exp] 320 / 9e-113 AT3G49940 198 / 5e-64 LOB domain-containing protein 38 (.1) Potri.005G145500 [exp] 202 / 1e-65 AT5G67420 244 / 2e-81 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) Potri.007G053600 [exp] 199 / 1e-64 AT3G49940 263 / 3e-89 LOB domain-containing protein 38 (.1) Potri.009G089600 [exp] 185 / 2e-59 AT3G49940 195 / 7e-63 LOB domain-containing protein 38 (.1) Potri.001G295700 [exp] 181 / 1e-57 AT3G49940 186 / 2e-59 LOB domain-containing protein 38 (.1) Potri.008G120600 [exp] 165 / 6e-51 AT1G68510 228 / 3e-75 LOB domain-containing protein 42 (.1) Potri.004G100100 [exp] 165 / 2e-50 AT3G02550 277 / 2e-93 LOB domain-containing protein 41 (.1) Potri.017G114500 [exp] 164 / 4e-50 AT3G02550 291 / 5e-99 LOB domain-containing protein 41 (.1) Potri.010G125000 [exp] 158 / 3e-48 AT1G68510 220 / 2e-72 LOB domain-containing protein 42 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007758 [exp] 228 / 1e-75 AT3G49940 191 / 1e-60 LOB domain-containing protein 38 (.1) Lus10018697 [exp] 226 / 2e-75 AT5G67420 190 / 9e-61 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1) Lus10011530 [exp] 203 / 2e-65 AT3G49940 260 / 2e-87 LOB domain-containing protein 38 (.1) Lus10019292 [exp] 200 / 3e-64 AT3G49940 259 / 8e-87 LOB domain-containing protein 38 (.1) Lus10028470 [exp] 154 / 1e-48 AT1G67100 205 / 2e-68 LOB domain-containing protein 40 (.1) Lus10018993 [exp] 57 / 3e-10 AT3G26660 134 / 2e-41 LOB domain-containing protein 24 (.1) Lus10033843 [exp] 55 / 2e-09 AT1G07900 143 / 8e-44 LOB domain-containing protein 1 (.1) Lus10011645 [exp] 55 / 6e-09 AT2G28500 205 / 4e-67 LOB domain-containing protein 11 (.1) Lus10036130 [exp] 54 / 9e-09 AT2G28500 207 / 1e-67 LOB domain-containing protein 11 (.1) Lus10040313 [exp] 52 / 1e-08 AT5G66870 133 / 5e-40 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [poplar] [flax] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Potri.014G017400.1 pacid=42763988 polypeptide=Potri.014G017400.1.p locus=Potri.014G017400 ID=Potri.014G017400.1.v4.1 annot-version=v4.1 ATGAGCTGCAATGGTTGCCGAGTGCTGCGAAAGGGGTGCAGCGAGACATGCGTATTGAGGTCGTGTCTGCATTGGATCCCCACCCCTGAAGCCCAAGGTA ACGCTACCCTGTTTCTAGCTAAGTTTTTTGGCCGCAGTGATCTCATCTCTCTCATCTCCGCCGTTCCCGAGTCCCAACGCCCTGTTTTGTTTCAATCGCT GTTATTTGAGGCGTGCGGGAGAACAGTGAATCCGGTGAACGGAGCGGTGGGGCTGTTGTGGAGCGGTAACTGGCACGTGTGTCAGGCGGCTGTGGAGTCA GTGCTTGCCGGTGAAACCTTACGGCCGTTACCTGGAATTCTCACCGGAGTCTTAGCGCCGAATTGTGATGAATCATCTGACAGTTTCTCTGCGGCTGCGT ACGCCGTGCATAGCATGACGTGGAATCAATCAAAACCGTTTGATAAGGAGAATAATAATCAAGTGGTGTCTGATCATCATGTGAATCTGTGTCTCGCTAG AGGAAGAGGTGGAAGAGATAAGAGAGGAAGAGATGCGGTGTCGTTTTATACAGGAGGAGAATCGGAGACCACAAGCTTTGAAAGCAGTGGTGCTGATAAG AATAAACTTTTGAACCTGTTTGTTTGA
AA sequence Show only first row Show all	>Potri.014G017400.1 pacid=42763988 polypeptide=Potri.014G017400.1.p locus=Potri.014G017400 ID=Potri.014G017400.1.v4.1 annot-version=v4.1 MSCNGCRVLRKGCSETCVLRSCLHWIPTPEAQGNATLFLAKFFGRSDLISLISAVPESQRPVLFQSLLFEACGRTVNPVNGAVGLLWSGNWHVCQAAVES VLAGETLRPLPGILTGVLAPNCDESSDSFSAAAYAVHSMTWNQSKPFDKENNNQVVSDHHVNLCLARGRGGRDKRGRDAVSFYTGGESETTSFESSGADK NKLLNLFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37540	AS2	LBD39	LOB domain-containing protein ...		Potri.014G017400 [exp]	0	1
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Potri.002G119400 [exp]	1.41	0.8949
AT1G68300			Adenine nucleotide alpha hydro...		Potri.013G112300 [exp]	9.69	0.8086
					Potri.001G141701 [exp]	12.04	0.8600
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Potri.008G071500 [exp]	16.00	0.7915
					Potri.001G247000 [exp]	19.20	0.8491
					Potri.012G054000 [exp]	24.81	0.8505
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.009G106600 [exp]	27.54	0.7037
AT1G15230			unknown protein		Potri.003G053500 [exp]	28.63	0.7818
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Potri.003G031100 [exp]	29.08	0.7452
AT1G54610			Protein kinase superfamily pro...		Potri.007G077600 [exp]	29.98	0.8249

Compare expression of checked genes

Potri.014G017400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.