Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43140 183 / 2e-58 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G14860 155 / 3e-47 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 155 / 3e-47 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G42770 49 / 2e-07 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G090600 [exp] 169 / 1e-52 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.001G296400 [exp] 167 / 3e-52 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.010G032900 [exp] 54 / 6e-09 AT2G42770 271 / 9e-93 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.016G031400 [exp] 39 / 0.0009 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018700 [exp] 177 / 7e-55 AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10002118 [exp] 158 / 2e-48 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10011424 [exp] 156 / 2e-47 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10007761 [exp] 143 / 6e-41 AT5G43140 223 / 1e-70 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10001421 [exp] 54 / 9e-09 AT2G42770 274 / 7e-90 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [poplar] [flax] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Potri.014G017800.2 pacid=42762271 polypeptide=Potri.014G017800.2.p locus=Potri.014G017800 ID=Potri.014G017800.2.v4.1 annot-version=v4.1 ATGATGTCATCAACATCATCTAGTTCTTTTGACTTCATTAGGACATTACGCATGGCTGGATATGGTTTGCTATTTTTAGGGCCATCACAGCATCTTTGGT TCAATTTTATGAGAAAAGTTCTCCCAAAACGTGATGTGCTAACTACCTTCAAGAAAGTTTTTATGGGACAAGCAGTTTATGGACCTGCTAATGCTACCCT TTTTTCTCCTATAATGCAGCTTTACAAGGCTATCTTGTGTTTGTTTCCACCACAAGGTTATAGAGAGGCAGTAATTGGTCAATTCTTTATCATCTCTCAT TTGTACAAGTCTGTGGAGGCAACACCAGAGCCCTCCTCTAGCTCAGGTGAAAGAGGCGATGAGATAGTAGCTAGATTGAAGCGTGACCTCCTTCCAACTC TGAGGAATGGTCTTTTGTACTGGCCAGTCTGTGATTTTGCGACATATAAATTTGTGCTCGTTCATCCACAGCCATTGGTGAACATTATTTGTTCATATGT GTGGACAATCTATTTGACATACATGGCAAGCTTAAAGAAAGCGAGCACGGATTAA
AA sequence Show only first row Show all	>Potri.014G017800.2 pacid=42762271 polypeptide=Potri.014G017800.2.p locus=Potri.014G017800 ID=Potri.014G017800.2.v4.1 annot-version=v4.1 MMSSTSSSSFDFIRTLRMAGYGLLFLGPSQHLWFNFMRKVLPKRDVLTTFKKVFMGQAVYGPANATLFSPIMQLYKAILCLFPPQGYREAVIGQFFIISH LYKSVEATPEPSSSSGERGDEIVARLKRDLLPTLRNGLLYWPVCDFATYKFVLVHPQPLVNIICSYVWTIYLTYMASLKKASTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43140			Peroxisomal membrane 22 kDa (M...		Potri.014G017800 [exp]	0	1
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.005G150400 [exp]	11.74	0.9006
AT5G47470			Nodulin MtN21 /EamA-like trans...		Potri.003G077300 [exp]	13.60	0.9318	N21L4
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	17.32	0.9142
AT2G39670			Radical SAM superfamily protei...		Potri.008G056500 [exp]	20.04	0.9208
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Potri.005G235000 [exp]	23.66	0.9116
AT5G55740		CRR21	chlororespiratory reduction 21...		Potri.006G155400 [exp]	24.12	0.9211
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Potri.006G122100 [exp]	25.78	0.9144
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Potri.005G140800 [exp]	39.39	0.9139
AT3G52155			Phosphoglycerate mutase family...		Potri.006G000600 [exp]	40.21	0.9140
AT1G57790			F-box family protein (.1)		Potri.016G079300 [exp]	44.73	0.8889

Compare expression of checked genes

Potri.014G017800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.