Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26680 457 / 2e-163 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119800 [exp] 555 / 0 AT2G26680 449 / 4e-160 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019418 [exp] 484 / 9e-174 AT2G26680 460 / 4e-164 unknown protein Lus10005721 [exp] 484 / 1e-173 AT2G26680 444 / 6e-158 unknown protein Lus10043275 [exp] 476 / 9e-170 AT2G26680 457 / 6e-162 unknown protein Lus10030089 [exp] 429 / 8e-152 AT2G26680 400 / 4e-140 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05050 [poplar] [flax] Methyltransf_21 Methyltransferase FkbM domain
Representative CDS sequence Show only first row Show all	>Potri.014G017900.1 pacid=42763024 polypeptide=Potri.014G017900.1.p locus=Potri.014G017900 ID=Potri.014G017900.1.v4.1 annot-version=v4.1 ATGGCAAATGCCTGGAAAAGAGAAAGCAACAAACAGCCAAAATACCTCTCTCCAATCCTTCTCCTCCTCTCACTATCTCTCTTCCTCCTGTTTCTCTTCT TTTTCTACGCTCGATCCCCATTGAATCCTCCTAACTCCACGCTTTATGTACCCCGAGTTTACCCAATCCCTCCTTTTGATTGCTTAAAATCTCCACAAGC TCACCCTGTGGTTGCCAACATAGTGGAAAACCTCAAATACCCCTTCCTCTACTCTCTCTCGGATTTTGGGTCCTTGCCCGACAAGCCCCACAAGAACATT GTCAGGCTTCTGAAAGGAAAGCCTTTCAGAAAGCCAGATATTTCAGCCACGATTCAGCAACTTCTTGAAGGAATGAAAGGGAGAAATGGGTTGGTTGTGG ATGTTGGTGCTAATGTGGGAATGGCGAGTTTCGCAGCCGCGGTTATGGGCTTTAAAGTGCTGGCTTTTGAGCCAGTGATTGACAACCTTCTGAGGATTTG TGATGGGATTTGGTTTAATCGTGTTGCGGACTTGGTTACTGTTTTTGAGGCTGCTGTCTCTGATCGGATTGGCAATATCACTTTTTACAAGCTGGTAGGT CGGCTTGACAATAGTGCTGTTTCAGCCACTGGTGCAAAGTTGGCATTCAAGTCCAACGAAGAAATAGCCCTTCAAGTAAGGACCATCCCCCTTGACGAAC TAATAACAGATTCAGAGCCTGTGTTGCTTCTCAAAATAGATGTCCAGGGATGGGAATATCATGTACTGAAAGGGGCCGTGAAATTACTGTCAAGAAAGAA AGATGAAGCCCCCTACCTAATTTACGAGGAAGATGAAAGGTTGCTGCAAGCGAGCAACAGTAGTGCCAAAGAGATCCGGGATTTCCTCCGAAGTGTTGGT TTTAGTCATTGTATCCAGCACGGTACAGATGCCCATTGCACCAAGGATTAG
AA sequence Show only first row Show all	>Potri.014G017900.1 pacid=42763024 polypeptide=Potri.014G017900.1.p locus=Potri.014G017900 ID=Potri.014G017900.1.v4.1 annot-version=v4.1 MANAWKRESNKQPKYLSPILLLLSLSLFLLFLFFFYARSPLNPPNSTLYVPRVYPIPPFDCLKSPQAHPVVANIVENLKYPFLYSLSDFGSLPDKPHKNI VRLLKGKPFRKPDISATIQQLLEGMKGRNGLVVDVGANVGMASFAAAVMGFKVLAFEPVIDNLLRICDGIWFNRVADLVTVFEAAVSDRIGNITFYKLVG RLDNSAVSATGAKLAFKSNEEIALQVRTIPLDELITDSEPVLLLKIDVQGWEYHVLKGAVKLLSRKKDEAPYLIYEEDERLLQASNSSAKEIRDFLRSVG FSHCIQHGTDAHCTKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26680			unknown protein		Potri.014G017900 [exp]	0	1
AT4G01220		MGP4	male gametophyte defective 4, ...		Potri.014G092400 [exp]	8.30	0.6403
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.010G053700 [exp]	8.60	0.7348
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Potri.001G044200 [exp]	10.81	0.6560
AT3G56500			serine-rich protein-related (....		Potri.002G250700 [exp]	15.74	0.6344
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Potri.005G073000 [exp]	23.68	0.7015	Pt-ATGB3.3
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.008G090700 [exp]	29.15	0.6388
AT1G34130		STT3B	staurosporin and temperature s...		Potri.012G036300 [exp]	29.24	0.6445	Pt-STT3.2
AT1G08750			Peptidase C13 family (.1.2.3)		Potri.019G014000 [exp]	32.24	0.6874
AT4G14965		ATMAPR4	membrane-associated progestero...		Potri.016G022700 [exp]	40.98	0.5956
AT5G53280		PDV1	plastid division1 (.1)		Potri.012G032200 [exp]	77.24	0.6193

Compare expression of checked genes

Potri.014G017900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.