Plant FIBer expression Database

Potri.014G018000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43130 606 / 0 TAF4, TAF4B TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
AT1G27720 372 / 2e-116 TAF4b TBP-associated factor 4B (.1)
AT1G32230 45 / 0.0002 ATP8, CEO1, RCD1, AtRCD1 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G119900
[exp]
1346 / 0 AT5G43130 634 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007763
[exp]
751 / 0 AT5G43130 576 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Lus10018701
[exp]
718 / 0 AT5G43130 596 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Lus10008297
[exp]
677 / 0 AT5G43130 448 / 3e-144 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Lus10033265
[exp]
668 / 0 AT5G43130 404 / 1e-127 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Lus10038047
[exp]
122 / 8e-31 AT5G43130 145 / 1e-39 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Lus10035390
[exp]
46 / 0.0002 AT2G35510 352 / 5e-114 similar to RCD one 1 (.1)
Lus10030991
[exp]
46 / 0.0002 AT1G32230 376 / 2e-123 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0012 Histone PF05236 TAF4 Transcription initiation factor TFIID component TAF4 family
CL0012 PF12174 RST RCD1-SRO-TAF4 (RST) plant domain
Representative CDS sequence
>Potri.014G018000.1 pacid=42764234 polypeptide=Potri.014G018000.1.p locus=Potri.014G018000 ID=Potri.014G018000.1.v4.1 annot-version=v4.1
ATGGACCCTAACATAATGAGGCTTCTCGAAGAAGACGAGGACGAAACCATGCATTCCGGTGCTGATGTGGAGGCTTTCCAAGCTGCCCTGAACAGGGATA
TTGGGGGCGACGTGTCCAACTCGCAGCCGTCTGATTCGAGTGCGGGGAAAATTGGCAATGCCAATAATACCGAGGAACTTGATGCAAAAAATGTTCAACG
ACAACATCATCAGGAGCAGCACACATCTGCAATGGAGACAAAGCAGAATGGACCTAATGCTGAGAACCAACAGCAGCAGGGGGGTTTCCCACAGGAACCA
ACCCGCCCGCCATTACTTAAGAAAACATCCCAAGATGATATTAAACAAGAGCTTGTGGAACAGGCTCCTCTCCAGACTCCTCAATCGATTGGGATGCAAA
GCTATGAGAAAAATCCTATCCCAAAATCCGAGCCTGATAAAATGCAAAGTTCTGATGGTGATCCTCACTTTTTAAATTTTCAGAAGATGAGCAATCAGCA
AACTGCAGGCACAGATCAGGCAGGCAACCAAAAGAATAGCAAGCAGATACCTTTTGCGATATTGTTGCCTGCCTTAAAGCCTCATCTTGATAAAGACAGA
GAGATGCAGCTACAAACTTTATATAATAAACTGAGGAAAAATGAAATTGCAAAAGACCAATTTGTCAGACTCATGAGAAATATTGTTGGGGATCAAGTGC
TCAGGCTGGCAGCTGCACAACTGCAATCACAGCCAGGTACCAACCAATCCCAGTTACAGCCTCAAGCTGGTCGCCAGCTCGATGGGCGAATGCCTGCTGG
TATCAGTGCTGCTCAGTTTCCTGATCCACATCATTCTGTACTTCATCCGAGGGGATCTATTCCTGCAGAACCATCTCATAATCCTCCTTCAGCAGTCCAA
TTGCAGACTGATTCAAGCATTGTCAATTCTCAGAAATCCAAAGCGGTAGAATGGAAGCCAGATTCTCTTGTAATGCAAGCAAGCCAATCACATTCCTCCA
ATGCCAGCATTTCCAATCAAGAAAGAGAGCGATCCTCAATTGCAATGCAAGGGCAGAACAAGCAACAACAACATGTGAACTTTCCACCAACTTCCTTTCC
AATGTATGGAAGCAGTGGTGGTAATTACCATCCATATTCTGGGACAAATGTTAGTACTTCAGGACCATCTGTGAAGCCACAACCCCATGATCCACAAACA
AGGCAAATTCTACATCATCAAAATCTGGGTGTGACTCAAATAGGAGGGCCAATGCACAGCATGATAAGCACGCCGAAGTTTGAGAGGCAAAATTCTGCTG
ATGATCCTAGTAGAGTGCACAGTGGTTCTGTTTCCCATTATACAAACAAATCAGCATTGCAACAGAATTCAGCTCCTTGGCAAGCACCATCAAATAGAGA
GAAAAGTCCTGCTTCATTCTCTTCGTTGAATTATGTAAAACCAGGTTTGCTTGAACAGGCTGGTGAGCAGCAGAACAAACCCCAGTTGTCGAGCCCTCAA
GTGCTGTCTCCATCACCTGTTGAAAAGGGAAATGCAATTTCAGGAAATTTAAAGGATCAATCTTTAGACAAGCAGTCCACTAAAATTGTTTTTTCAACAG
TGCCTCCCAATTCTGCCCCCCCTTCAATTGCGACTCAAATGGACCCCAATGGCCAGGCAGGCTCGCGAATCTCATCTGTAGCTTCTCCTGCTGGAGTTAA
TGCAAGAACACCTCCCAAAAAGCCTTCTGTTGGCCAAAAGAAGCCATTTGAAGCACTTGGTTCTTCTCCACCTGCGTCAACTAAGAAGCATAAGGTATCT
GGGGCTTTTTCGGATCAAAGCATTGAACAACTCAATGATGTCACTGCTGTCAGTGGAGTTAATCTCAGGGAAGAGGAAGAACAGCTATTTTCAGGGCCAA
AGGAGGACAGTCGAGTTTCCGAAGCATCTCGACGGTTTGTACAAGAAGAAGAAGAAAGGCTGATGTTGCAGAAAACTCCTTTGAAGAAAAAATTAGGAGA
GATCATGGCCAAATGTGGTTTGAAGAACTTTGGCACTGATGTGGAGCGATGCTTGTCCTTGTGTGTGGAAGAAAGGATGCGCGGACTAATAAGTAACATG
ATAAGGCTGTCAAAACAGCGTGTTGATGCCGAGAAGCCAAGACACCAGACTCTAATCACTTCAGATGTTCGGCAACAGATCATGACAATGAACCGGAAAG
CTCAGGAAGAATTGGAGAAAAAGCAGGCTGAAGCAGAAAAGCTCCAAAAAGTTAACGAACCGGAGGGTGACAATGGAGGTGAAGGTGAGAAGGAGAAAGA
TGAAGGTCGAGTGAAATCAGTGAAGGTTAACAAAGAGGAGGATGACAAAATGAGGACAACAGCTGCTAATGTTGCTGCTCGAGCAGCTGTTGGGGGAGAT
GACATACTGTCAAAATGGCAACTAATGGCTGAGCAAGCCCGGCAGAAACGTGAAGGAGGGATGGAGGGGGCATCCGGTTCCCAGCCAGTTAAAGATGTGA
ACCGCAAACCTCTATCACCATCAGGAAGAAATATGATGGAAAATCTCGAAGCAGAAAAAAGGAGCCATGTGGTTCCTTCTTCTGCATCTGGAGCTGGTAG
GAAATGTGGAAGGAATCAAGCAATTGTGCCTCAAACCAAAGTGGTCCGTACCATTTCTGTTAAGGATGTAATGTCAGTGCTGGAAAGGGAACCTCAGATG
TCCAGGTCTACTCTGATTTACCAACTGTACGAGCGAATCAGGTCTGATGCTACAGCTGAATAA
AA sequence
>Potri.014G018000.1 pacid=42764234 polypeptide=Potri.014G018000.1.p locus=Potri.014G018000 ID=Potri.014G018000.1.v4.1 annot-version=v4.1
MDPNIMRLLEEDEDETMHSGADVEAFQAALNRDIGGDVSNSQPSDSSAGKIGNANNTEELDAKNVQRQHHQEQHTSAMETKQNGPNAENQQQQGGFPQEP
TRPPLLKKTSQDDIKQELVEQAPLQTPQSIGMQSYEKNPIPKSEPDKMQSSDGDPHFLNFQKMSNQQTAGTDQAGNQKNSKQIPFAILLPALKPHLDKDR
EMQLQTLYNKLRKNEIAKDQFVRLMRNIVGDQVLRLAAAQLQSQPGTNQSQLQPQAGRQLDGRMPAGISAAQFPDPHHSVLHPRGSIPAEPSHNPPSAVQ
LQTDSSIVNSQKSKAVEWKPDSLVMQASQSHSSNASISNQERERSSIAMQGQNKQQQHVNFPPTSFPMYGSSGGNYHPYSGTNVSTSGPSVKPQPHDPQT
RQILHHQNLGVTQIGGPMHSMISTPKFERQNSADDPSRVHSGSVSHYTNKSALQQNSAPWQAPSNREKSPASFSSLNYVKPGLLEQAGEQQNKPQLSSPQ
VLSPSPVEKGNAISGNLKDQSLDKQSTKIVFSTVPPNSAPPSIATQMDPNGQAGSRISSVASPAGVNARTPPKKPSVGQKKPFEALGSSPPASTKKHKVS
GAFSDQSIEQLNDVTAVSGVNLREEEEQLFSGPKEDSRVSEASRRFVQEEEERLMLQKTPLKKKLGEIMAKCGLKNFGTDVERCLSLCVEERMRGLISNM
IRLSKQRVDAEKPRHQTLITSDVRQQIMTMNRKAQEELEKKQAEAEKLQKVNEPEGDNGGEGEKEKDEGRVKSVKVNKEEDDKMRTTAANVAARAAVGGD
DILSKWQLMAEQARQKREGGMEGASGSQPVKDVNRKPLSPSGRNMMENLEAEKRSHVVPSSASGAGRKCGRNQAIVPQTKVVRTISVKDVMSVLEREPQM
SRSTLIYQLYERIRSDATAE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G43130 TAF4, TAF4B TBP-associated factor 4B, TBP-... Potri.014G018000
[exp]
0 1
AT5G52520 PRORS1, OVA6 PROLYL-TRNA SYNTHETASE 1, OVUL... Potri.004G078932
[exp]
2.82 0.7883
AT2G20210 RNI-like superfamily protein (... Potri.014G194800
[exp]
3.16 0.8148
AT2G43210 Ubiquitin-like superfamily pro... Potri.007G123800
[exp]
3.46 0.7521
AT5G57160 ATLIG4 DNA ligase IV (.1) Potri.018G141900
[exp]
7.07 0.7494 LIG4.1
AT4G38360 LAZ1 LAZARUS 1, Protein of unknown ... Potri.009G165600
[exp]
9.79 0.7412
AT1G26120 ICME-LIKE1 Isoprenylcysteine methylestera... Potri.010G132200
[exp]
10.24 0.6489
AT1G63700 EMB71, MAPKKK4,... YODA, MAP KINASE KINASE KINASE... Potri.015G146700
[exp]
13.00 0.7089
AT2G14680 MEE13 maternal effect embryo arrest ... Potri.001G292800
[exp]
13.96 0.6841
AT2G32250 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.... Potri.016G018100
[exp]
18.33 0.6229
AT3G22780 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO... Potri.013G038301
[exp]
19.18 0.6822

Potri.014G018000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.