Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24230 133 / 2e-35 ACBP3 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) AT4G27780 105 / 2e-25 ACBP2 acyl-CoA binding protein 2 (.1) AT5G53470 99 / 5e-23 ACBP1 acyl-CoA binding protein 1 (.1) AT5G27630 57 / 1e-08 ACBP5 acyl-CoA binding protein 5 (.1) AT3G05420 56 / 3e-08 ACBP4 acyl-CoA binding protein 4 (.1.2) AT1G31812 45 / 4e-06 ACBP6, ACBP acyl-CoA-binding protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G120200 [exp] 405 / 4e-141 AT4G24230 113 / 3e-28 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Potri.012G017700 [exp] 103 / 1e-24 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1) Potri.015G010200 [exp] 102 / 3e-24 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1) Potri.013G018800 [exp] 56 / 2e-08 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.005G026900 [exp] 52 / 3e-07 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.001G130200 [exp] 47 / 6e-07 AT1G31812 140 / 4e-45 acyl-CoA-binding protein 6 (.1) Potri.003G103700 [exp] 43 / 3e-05 AT1G31812 138 / 2e-44 acyl-CoA-binding protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007764 [exp] 159 / 3e-45 AT4G24230 141 / 1e-38 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Lus10018702 [exp] 146 / 2e-38 AT5G67360 607 / 0.0 Subtilase family protein (.1) Lus10022382 [exp] 100 / 1e-23 AT4G27780 432 / 2e-152 acyl-CoA binding protein 2 (.1) Lus10005910 [exp] 97 / 2e-22 AT4G27780 430 / 3e-151 acyl-CoA binding protein 2 (.1) Lus10004499 [exp] 59 / 2e-09 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10029902 [exp] 58 / 7e-09 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 57 / 1e-08 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 57 / 2e-08 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10013605 [exp] 45 / 8e-06 AT1G31812 132 / 1e-41 acyl-CoA-binding protein 6 (.1) Lus10021246 [exp] 42 / 7e-05 AT1G31812 132 / 1e-41 acyl-CoA-binding protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0632 [poplar] [flax] FERM_M PF00887 [poplar] [flax] ACBP Acyl CoA binding protein
Representative CDS sequence Show only first row Show all	>Potri.014G018700.3 pacid=42763898 polypeptide=Potri.014G018700.3.p locus=Potri.014G018700 ID=Potri.014G018700.3.v4.1 annot-version=v4.1 ATGGAGCTTGTTAAAGAACTGTTTGTGACTGGTGTTATTGCTGTTCTGTTCTCCTTTCTCATAGCCAAACTTGTTTCTATGGCCATGTCCAGTGGTGATT CTAGCCACCACGAAGATTCTCAAACTCAAAATGTTGATCGAGAAGCTTTTTCTGCAGCAGAGATTGTCGGTGAAGAAGAAGAAAAGGGGATGATGGAGGA GTTACGGTATCGTGAAAGATTGGAAGTTGAGGGGCTTAAGAGCGAAATGAGAACGGAGTTTGTTGAACAAGTAACAGAAAAGGTCTATGAATTTGTTACA GGAATTTCTTCTGTCGAGCACGCTAAAGATTCAGCAACTCGTGACGAGATACTACTTGAAAGTGAAACTGAGGTTCAAGAATTGATCGAGGCAATTTTAA AAGAAGAGGAGGAAGAAGACAAGCTAAAAGAAGGTGACTTTTACGATGAAGACGTCAAGCAAGTAAACCTGGTTAGTTCTAATAGAGAAAACAGAGAAGA GGAACCGATTGGCGTTGAATTAAACGTTGTCGAGGAGATTGGGGTTGCTGGGAGTGATTCAAAAGAGAGGATTGAAGAAATTGAAGTTAACGAGGTCGAG GATGATGATGATTGGGAAGGGATAGAAAGGAGTGAATTGGAGAAAATATTTGGAGAAGCAGCGAAGTTTGTTGAGGAGTCAGGAAACAAAGATGAGAGAT TGGCAAGTGTAGGGAGCGATTTGCAGATGGAGTTGTATGGACTTCATAAGATTGCTACTGAGGGGCCTTGCAGGGAGCAGCCTCCCATGGCTCTCAAAGT TTCTGCTCGTGCTAAGTGGAATGCTTGGCAAAGGCTGGGAAACATGAGTCCAGAGGCGGCTATGGAGCAGTATATTGCCCTTGTATTGGAGAGAGCACCA GGGTGGATGGAAGAAAAACCTAGTGGAGACAATAAACCAGGATCATCTGAAGTGGAAAATCTTGTTGCTGTGACTCCAGATTTAAGTACATTACCATCCC GTCAACCAAATTTTACAGATGAAATGACATGTAGGAATCCAGAACCGAAGCCTGTTGCTGAAGAAGGCGATCCGACAGGGGGCTCAAACCTGGATAGCAG GCCAAAGAATGACAAGCATTGCCCTGCTGCTTGA
AA sequence Show only first row Show all	>Potri.014G018700.3 pacid=42763898 polypeptide=Potri.014G018700.3.p locus=Potri.014G018700 ID=Potri.014G018700.3.v4.1 annot-version=v4.1 MELVKELFVTGVIAVLFSFLIAKLVSMAMSSGDSSHHEDSQTQNVDREAFSAAEIVGEEEEKGMMEELRYRERLEVEGLKSEMRTEFVEQVTEKVYEFVT GISSVEHAKDSATRDEILLESETEVQELIEAILKEEEEEDKLKEGDFYDEDVKQVNLVSSNRENREEEPIGVELNVVEEIGVAGSDSKERIEEIEVNEVE DDDDWEGIERSELEKIFGEAAKFVEESGNKDERLASVGSDLQMELYGLHKIATEGPCREQPPMALKVSARAKWNAWQRLGNMSPEAAMEQYIALVLERAP GWMEEKPSGDNKPGSSEVENLVAVTPDLSTLPSRQPNFTDEMTCRNPEPKPVAEEGDPTGGSNLDSRPKNDKHCPAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Potri.014G018700 [exp]	0	1
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Potri.013G021300 [exp]	2.00	0.8240
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Potri.007G011200 [exp]	14.14	0.7954
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Potri.011G046600 [exp]	21.07	0.8309
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G003100 [exp]	35.84	0.7467
AT5G51180			alpha/beta-Hydrolases superfam...		Potri.001G079400 [exp]	70.31	0.7557
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.010G104500 [exp]	83.52	0.7926
AT2G17020			F-box/RNI-like superfamily pro...		Potri.004G179571 [exp]	149.89	0.7546
AT2G22420			Peroxidase superfamily protein...		Potri.007G096200 [exp]	213.61	0.7481
AT1G77000		ATSKP2;2, SKP2B	ARABIDOPSIS HOMOLOG OF HOMOLOG...		Potri.005G185700 [exp]	229.21	0.7437

Compare expression of checked genes

Potri.014G018700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.