Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 994 / 0 ARA12 Subtilase family protein (.1) AT2G05920 746 / 0 Subtilase family protein (.1) AT5G51750 740 / 0 ATSBT1.3 subtilase 1.3 (.1) AT3G14240 711 / 0 Subtilase family protein (.1) AT3G14067 710 / 0 Subtilase family protein (.1) AT4G34980 689 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT2G04160 577 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G04110 577 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G01900 556 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G59810 536 / 2e-180 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G120400 [exp] 1403 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 942 / 0 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 750 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 743 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 726 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.015G133800 [exp] 724 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.012G131500 [exp] 721 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.001G163600 [exp] 706 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 703 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007765 [exp] 1105 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 1001 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 971 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 966 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10014853 [exp] 758 / 0 AT5G67360 806 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 747 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 746 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10018702 [exp] 716 / 0 AT5G67360 607 / 0.0 Subtilase family protein (.1) Lus10013154 [exp] 676 / 0 AT3G14067 915 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 660 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.014G018900.1 pacid=42763274 polypeptide=Potri.014G018900.1.p locus=Potri.014G018900 ID=Potri.014G018900.1.v4.1 annot-version=v4.1 ATGAAGATGGAAAGACAGGTCATGAGGGTGAAAGACTTGAACCTCGGGCTTCAACTGATAGCCACACTTCTGGTTCTGTGCTGCTGTTACACACACGCGG TAGCAGAAGAGAAGAGCCAGCAGACGAAGAAGACTTTCATAGTTCACATGGACATGTCCAAGATGGCAGCAACTTACGAAGATCATTTTCAATGGTACGA TTCATCTTTAAAATCTGTATCAGAATCTGCTGACATGCTTTACGCTTACAACAACATAATCCATGGGTTTTCCACCCGACTCACACCAGAGGAAGCTGAA TTACTTGAAAAACAACCCGGAATTCTAGCGGTCCTACCTGAAATGATTTACAAGCTGCACACAACTCATTCCCCTGAGTTCCTTGGATTGGGGAAAAGCG ATGCTGTGCCCCCTGCGTCTGCCTCCATGAGCGAGGTGATCGTTGGAGTACTAGACACTGGTGTCTGGCCAGAGATAAAAAGCTTTGATGACACAGGGCT TGGCCCCATACCAAGTACCTGGAAAGGTACTTGCGCGGTGGGTAAGAACTTCAATTCATCGAGCTGTAACCGGAAACTGATAGGTGCACAATATTTCTCA AAAGGCTATGAAGCAGCATTTGGACCTATCGATGAGACAATGGAATCGAAGTCACCAAGAGATGATGATGGCCATGGAACTCACACAGCAACTACAGCAG CTGGGTCAGCTGTCTCAGGAGCTAGCCTTTTTGGGTATGCTTTTGGGACAGCGCGTGGAATGGCTACACAAGCTCGAGTAGCAGCTTACAAGGTGTGTTG GTTGGGTGGATGTTTTAGCTCTGATATTTTAGCAGCAATGGAAAAGGCTGTTGCAGATGGCGTTAATGTCATTTCAATGTCCATTGGAGGAGGAATCTCA GATTACAATCGAGATACAGTAGCGATTGGAGCTTTCAGGGCAGTTGCACAGGGAATTCTTGTCTCATGCTCGGCCGGAAATGGTGGGCCCAGCCCAGGCA GCTTGACTAATGTTGCTCCCTGGATAACCACTGTAGGTGCTGGAACGTTGGACCGTGATTTCCCAGCTTATGTGAGCCTTGGAAATGGAAAGAACTACTC AGGCATATCACTTTATAGTGGAAAGCCATTATCTGATTCATTGTTGCCACTTGTTTATGCTGGTAATGTGAGCAATTCAACAAGCGGCAACCTTTGCATG ACAGGAACTTTGGTTCCTTCACAAGTTGCAGGAAAAATTGTGATATGTGATCGAGGGTTGAATAGTAGGGTTCAAAAGGGCATGGTGGTGAGAGATTCCG GTGGTCTAGGGATGATTTTAGCAAACACAGAGCTGTATGGAGAAGAGCTAGTCGCTGATGCACATCTTCTACCCACATCCACTGTAGGGCAAAGAACTGC CGATGCAATTAAGAATTATGCCTTCTCTGATCCAAAGCCAATGGCCACGATTGCTTCTGGAGGCACAAAGCTTGGAGTTGAGCCATCGCCAGTGTTAGCA GCATTCAGTTCCAGAGGTCCAAATCTGGTAACTCCAGAAGTACTCAAACCAGATCTAATAGCACCAGGAGTCAACATTCTGGCGGGATGGACCGGGGCAG TTGGTCCAACTGGGCTAACAAGCGACAAGAGGCATGTGAGCTTCAATATCATTTCAGGTACATCAATGTCATGTCCTCATGTCAGTGGATTAGCTGCGCT CGTCAAGGCTGCTCACCAGGACTGGAGTCCAGCAGCCATCAAGTCCGCTCTCATGACCACAGCCTATGCAACATACAAAAATGGAGAGAACATATTAGAC GTGGCTACGGGACAACCATCAACGCCGTTTGATTTTGGCGCCGGACATGTAAATCCAGTAGCAGCCCTTGATCCTGGCCTTGTCTATGATGCCTCTGTTG ATGACTACATCAACTTCTTTTGTGCTCTAAACTATAGTGCATCTGACATTAAACAAATCACAAACAAAGACTTCACTTGCGACTCGAGCAAGAAATACAG TCTGGGGGATCTTAATTACCCATCGTTCTCTGTTCCACTAGAAACTGCTTCAGGCAAAGGGGGCGGAGCTGGTGTAACAAGTACAGTCAAATACACCAGG ACTCTGACAAATGTGGGTGTTCCAGCAACATACAAGCTTTCCATGACTTCAAAAACTCCGTCAGTTAAGATCCTAGTTGAGCCAGAGTCCCTGAGCTTTG CTAAAGAATACGAGAAAAAGACTTATACAGTGACTTTCACTGCTACATCCATGCCTTCCGGTACAAACAGCTTTGCTCACCTGGAGTGGTCAGATGGGAA GCATGTTGTAGGCAGTCCAATAGCTTTCAGCTGGACATGA
AA sequence Show only first row Show all	>Potri.014G018900.1 pacid=42763274 polypeptide=Potri.014G018900.1.p locus=Potri.014G018900 ID=Potri.014G018900.1.v4.1 annot-version=v4.1 MKMERQVMRVKDLNLGLQLIATLLVLCCCYTHAVAEEKSQQTKKTFIVHMDMSKMAATYEDHFQWYDSSLKSVSESADMLYAYNNIIHGFSTRLTPEEAE LLEKQPGILAVLPEMIYKLHTTHSPEFLGLGKSDAVPPASASMSEVIVGVLDTGVWPEIKSFDDTGLGPIPSTWKGTCAVGKNFNSSSCNRKLIGAQYFS KGYEAAFGPIDETMESKSPRDDDGHGTHTATTAAGSAVSGASLFGYAFGTARGMATQARVAAYKVCWLGGCFSSDILAAMEKAVADGVNVISMSIGGGIS DYNRDTVAIGAFRAVAQGILVSCSAGNGGPSPGSLTNVAPWITTVGAGTLDRDFPAYVSLGNGKNYSGISLYSGKPLSDSLLPLVYAGNVSNSTSGNLCM TGTLVPSQVAGKIVICDRGLNSRVQKGMVVRDSGGLGMILANTELYGEELVADAHLLPTSTVGQRTADAIKNYAFSDPKPMATIASGGTKLGVEPSPVLA AFSSRGPNLVTPEVLKPDLIAPGVNILAGWTGAVGPTGLTSDKRHVSFNIISGTSMSCPHVSGLAALVKAAHQDWSPAAIKSALMTTAYATYKNGENILD VATGQPSTPFDFGAGHVNPVAALDPGLVYDASVDDYINFFCALNYSASDIKQITNKDFTCDSSKKYSLGDLNYPSFSVPLETASGKGGGAGVTSTVKYTR TLTNVGVPATYKLSMTSKTPSVKILVEPESLSFAKEYEKKTYTVTFTATSMPSGTNSFAHLEWSDGKHVVGSPIAFSWT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.014G018900 [exp]	0	1
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.019G079900 [exp]	3.46	0.8124
AT5G13290		SOL2, CRN	SUPPRESSOR OF LLP1 2, CORYNE, ...		Potri.001G066700 [exp]	5.74	0.7917
AT4G09970			unknown protein		Potri.013G102300 [exp]	7.74	0.7739
AT5G01015			unknown protein		Potri.016G143400 [exp]	12.80	0.7446
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.001G185900 [exp]	14.69	0.7981
AT5G40270			HD domain-containing metal-dep...		Potri.008G190200 [exp]	16.00	0.7913
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Potri.001G238400 [exp]	28.19	0.7906
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Potri.010G136100 [exp]	29.73	0.7546
AT3G60720		PDLP8	plasmodesmata-located protein ...		Potri.014G067000 [exp]	34.89	0.7904
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.008G110300 [exp]	38.15	0.7795

Compare expression of checked genes

Potri.014G018900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.