Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65860 531 / 0 ankyrin repeat family protein (.1.2) AT5G12320 51 / 7e-08 ankyrin repeat family protein (.1) AT4G19150 46 / 1e-05 Ankyrin repeat family protein (.1.2) AT5G14230 45 / 7e-05 unknown protein AT5G07840 42 / 0.0001 PIA1 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1) AT2G31800 44 / 0.0002 Integrin-linked protein kinase family (.1) AT3G04710 43 / 0.0002 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G43850 41 / 0.0009 Integrin-linked protein kinase family (.1.2) AT3G59830 41 / 0.0009 Integrin-linked protein kinase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333600 [exp] 53 / 1e-07 AT5G14230 975 / 0.0 unknown protein Potri.010G057300 [exp] 53 / 2e-07 AT5G14230 843 / 0.0 unknown protein Potri.009G070700 [exp] 47 / 2e-06 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.001G238800 [exp] 47 / 7e-06 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.010G185200 [exp] 47 / 9e-06 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.003G104400 [exp] 45 / 2e-05 AT5G61230 217 / 4e-73 phytochrome interacting ankyrin-repeat protein 2, ankyrin repeat protein 6, Ankyrin repeat family protein (.1) Potri.001G276100 [exp] 44 / 2e-05 AT5G12320 191 / 1e-63 ankyrin repeat family protein (.1) Potri.005G054800 [exp] 45 / 3e-05 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.013G042300 [exp] 44 / 0.0001 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032850 [exp] 561 / 0 AT5G65860 523 / 0.0 ankyrin repeat family protein (.1.2) Lus10036033 [exp] 53 / 3e-08 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10009696 [exp] 51 / 1e-07 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) Lus10020272 [exp] 48 / 7e-06 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10018958 [exp] 44 / 4e-05 AT5G07840 228 / 3e-77 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1) Lus10015811 [exp] 45 / 5e-05 AT5G14230 727 / 0.0 unknown protein Lus10022339 [exp] 45 / 9e-05 AT5G14230 974 / 0.0 unknown protein Lus10001414 [exp] 44 / 0.0001 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10003260 [exp] 44 / 0.0001 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10001605 [exp] 44 / 0.0002 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0063 [poplar] [flax] NADP_Rossmann PF12847 [poplar] [flax] Methyltransf_18 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.014G019000.1 pacid=42763221 polypeptide=Potri.014G019000.1.p locus=Potri.014G019000 ID=Potri.014G019000.1.v4.1 annot-version=v4.1 ATGGACGAATTCGAAATTCTCTGCGAAGCAGCGAAGAACGGTGACGTAGACAAAGTTAAATCTCTCATAAACTCAGGAATCGACGTTACTTACTTCGACA GCAATGGCCTCACTCCTCTCATGCACGCCGCCAAGCACGGCCACGCCGCTATCGTCAAGGACCTCCTCGAAGCTGGCGCACCGTGGAACGCTCTCTCTCC TTCCAATATCTCCGCAGGAGACTTCGCCATGGAAGCTGGCCACCAAGACGCCTTCGAAACTCTCCTCAACGCTGGGATTCAGTCTGAGTTAATATTAGGA ACAATTGCCAGGAAAGAGAAGTCGAATTCTGGTTATGGTGAGAATTACTTAGAAGATAGGGTTAGTTTTAGTGAAGACAAGATAATGGACTCGGATAGCA AGGCGATAATGATGGCTTGGGAGAAGCCATTGATGGAAGCACACGCAAAGGCGGTTTGCTCAGGTGGTGGTCATATACTGAACATTGGCTTTGGAATGGG GCTTGTGGATACAGCTATTCAACAATATAATCCGGCTATGCATACGATTGTTGAGGCGCATCCGGAGGTTTATGAACGGATGATTCGAAATGGTTGGGGT GAGAAGGATAATGTGAAGATAGTATTTGGGCGGTGGCAAGATGTTCTTTCTCAACTTGGAACTTATGATGGTATTTTCTTTGACACTTATGGAGAATATT ATGAAGATCTGAGGGAGTTTCACCAACACTTACCTGCGCTATTGAAGCCTGGAGGAATCTACTCTTTTTTCAATGGACTTTGTGGAGGTAACGCGTTCTT CCATGTTGTTTACTGTAATTTAGTCTCGCTAGAACTCGAGCACTTGGGCTACTCTACACAGTTAATTCCCTTGCCTGTTAAGGATTGTTTGGGAGAAGAA GTTTGGCAAGGTGTGAGACACAAGTATTGGCAGCTTGATACATACTATCTCCCTGTTTCTCAGTCTATCGAGGATTCATGA
AA sequence Show only first row Show all	>Potri.014G019000.1 pacid=42763221 polypeptide=Potri.014G019000.1.p locus=Potri.014G019000 ID=Potri.014G019000.1.v4.1 annot-version=v4.1 MDEFEILCEAAKNGDVDKVKSLINSGIDVTYFDSNGLTPLMHAAKHGHAAIVKDLLEAGAPWNALSPSNISAGDFAMEAGHQDAFETLLNAGIQSELILG TIARKEKSNSGYGENYLEDRVSFSEDKIMDSDSKAIMMAWEKPLMEAHAKAVCSGGGHILNIGFGMGLVDTAIQQYNPAMHTIVEAHPEVYERMIRNGWG EKDNVKIVFGRWQDVLSQLGTYDGIFFDTYGEYYEDLREFHQHLPALLKPGGIYSFFNGLCGGNAFFHVVYCNLVSLELEHLGYSTQLIPLPVKDCLGEE VWQGVRHKYWQLDTYYLPVSQSIEDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65860			ankyrin repeat family protein ...		Potri.014G019000 [exp]	0	1
AT2G17360			Ribosomal protein S4 (RPS4A) f...		Potri.013G011000 [exp]	4.47	0.8586
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Potri.004G113600 [exp]	5.00	0.8098
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.003G081600 [exp]	6.00	0.8228
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Potri.015G112900 [exp]	10.39	0.8514	P40.4
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.011G072400 [exp]	12.00	0.7912	RPL18.5
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132450 [exp]	13.26	0.8018
AT3G49910			Translation protein SH3-like f...		Potri.007G055900 [exp]	15.87	0.8052
AT5G39850			Ribosomal protein S4 (.1)		Potri.018G062300 [exp]	16.24	0.7900
AT4G31985			Ribosomal protein L39 family p...		Potri.006G188500 [exp]	18.65	0.7860
AT3G10950			Zinc-binding ribosomal protein...		Potri.002G140100 [exp]	21.90	0.7904

Compare expression of checked genes

Potri.014G019000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.