Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24220 544 / 0 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G58750 214 / 5e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G019500 [exp] 796 / 0 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120600 [exp] 612 / 0 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019600 [exp] 612 / 0 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 608 / 0 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019700 [exp] 587 / 0 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019300 [exp] 586 / 0 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120700 [exp] 571 / 0 AT4G24220 569 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030600 [exp] 302 / 3e-100 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030700 [exp] 300 / 2e-99 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032854 [exp] 573 / 0 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018705 [exp] 565 / 0 AT4G24220 590 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018704 [exp] 489 / 1e-173 AT4G24220 530 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000076 [exp] 410 / 5e-144 AT4G24220 394 / 3e-138 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039686 [exp] 298 / 1e-98 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039689 [exp] 277 / 2e-90 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039687 [exp] 263 / 1e-84 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040675 [exp] 214 / 6e-66 AT5G58750 421 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039688 [exp] 89 / 3e-20 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024788 [exp] 74 / 2e-16 ND 81 / 6e-24
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G019400.1 pacid=42763982 polypeptide=Potri.014G019400.1.p locus=Potri.014G019400 ID=Potri.014G019400.1.v4.1 annot-version=v4.1 ATGAGCTGGTGGTGGGCTGGTGATCTTAGCGCTGCCTGGAAGAAACCGGCAGTTCAAGGGGGCCAAGGAAGCGTGGCCTTGATAGTAGGAGTAACGGGAA TTGTCGGCAACAGCTTGGCAGAAATCCTCCCACGCTCCGACACACCAGGCGGTCCATGGAAAGTTTATGGAGTGGCCCGTCGTCCTCGTCCAAACTGGCA TGAGAACTGCCCAGTTGAGTACATCCAGTGTGACATCTCAGACTCGGCGCTAGCAAAATCAAAGCTTTCTCATCTCACTGATGTTACTCACATTTTTTAT GTCACCTGGGCCAGCCGATCCAACGAAGCAGAGAACTGCAAGATCAACGGCCTCATGTTCCGAAACCTTCTTCAGGCTGTTGTCCCCATCGCCACTAATC TCCGCCACGTCTGCCTCCAAACCGGAACCAAGAACTACATTGGCCCTTTCGAGTCATTTTATAATTTTGAATCTCATGATCCTCCTTACTCGGAGGATCT GCCGAGATTAAAGGTAGACAATTTTTACTACACTTTGGAAGATGTTATGTTCGAGGAAGTGGCAAAGAAAGAGGGAGTGACTTGGTCTGTTCACCGTCCT GATATCATATTTGGCTTCTCGCCCTATAGCTTGATGAATATAATTGTAACTCTTTCTGTTTATGCTGCTATATGCAAGCACGAGGGAGCTCCGTTGATGT TTCCAGGTACTAAAGAGGCGTGGAACTGTTACGCGATCGCATCAGATGCCGATCTGGTGGCAGAGCAGGAGATCTGGGCATGTGTGGAGCCTAATGCTCA AAACCAAGCGTTCAATATCCACAACGCAGATTACTTCAAGTGGAAGCATTTATGGAAAGTTCTGGCCGAGCAGTTCGGGATAGAAAAGTACGGGTTCGAA GAGGGGGGGGAAAGAGAGACCTTGGCTGAGAGGATGAAAGATAAAGGGCCAGTGTGGGAGGAGATCGTGAAGAAGAACCAGTTGTCTCCTACGAAGTTAG AGGAGGTTGGGGGCTGGTGGTTTGTGGACACCATGCTTAGTGGTGATGCCTTTATATCTTGCATGAATAAGAGCAAGGAACATGGATTCTTGGGGTTTAG GAATTCCACCAAATCATTTGTGCACTGGATTGGTAAGATGAGATCCCAGAAGATAATCCCTAATTGA
AA sequence Show only first row Show all	>Potri.014G019400.1 pacid=42763982 polypeptide=Potri.014G019400.1.p locus=Potri.014G019400 ID=Potri.014G019400.1.v4.1 annot-version=v4.1 MSWWWAGDLSAAWKKPAVQGGQGSVALIVGVTGIVGNSLAEILPRSDTPGGPWKVYGVARRPRPNWHENCPVEYIQCDISDSALAKSKLSHLTDVTHIFY VTWASRSNEAENCKINGLMFRNLLQAVVPIATNLRHVCLQTGTKNYIGPFESFYNFESHDPPYSEDLPRLKVDNFYYTLEDVMFEEVAKKEGVTWSVHRP DIIFGFSPYSLMNIIVTLSVYAAICKHEGAPLMFPGTKEAWNCYAIASDADLVAEQEIWACVEPNAQNQAFNIHNADYFKWKHLWKVLAEQFGIEKYGFE EGGERETLAERMKDKGPVWEEIVKKNQLSPTKLEEVGGWWFVDTMLSGDAFISCMNKSKEHGFLGFRNSTKSFVHWIGKMRSQKIIPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019400 [exp]	0	1
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019500 [exp]	3.16	0.7110
AT5G64830			programmed cell death 2 C-term...		Potri.007G080500 [exp]	22.09	0.6844
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.005G240700 [exp]	35.58	0.6743
AT5G63670		SPT42	SPT4 homolog 2 (.1.2)		Potri.008G002400 [exp]	70.22	0.6131
AT1G20225			Thioredoxin superfamily protei...		Potri.005G244400 [exp]	97.92	0.5758
AT3G21690			MATE efflux family protein (.1...		Potri.011G002900 [exp]	106.85	0.6040
AT4G37480			Chaperone DnaJ-domain superfam...		Potri.007G052400 [exp]	130.03	0.5879
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Potri.002G074700 [exp]	172.34	0.5716
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Potri.002G086900 [exp]	249.18	0.5589

Compare expression of checked genes

Potri.014G019400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.