Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43100 805 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G50050 655 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G22850 193 / 2e-54 Eukaryotic aspartyl protease family protein (.1) AT1G08210 180 / 2e-49 Eukaryotic aspartyl protease family protein (.1) AT2G36670 178 / 6e-49 Eukaryotic aspartyl protease family protein (.1.2) AT5G36260 160 / 1e-42 Eukaryotic aspartyl protease family protein (.1) AT1G05840 153 / 3e-40 Eukaryotic aspartyl protease family protein (.1) AT3G02740 151 / 3e-39 Eukaryotic aspartyl protease family protein (.1) AT1G65240 150 / 5e-39 Eukaryotic aspartyl protease family protein (.1) AT3G25700 141 / 4e-36 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G144600 [exp] 774 / 0 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 193 / 2e-54 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 189 / 6e-53 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 165 / 5e-44 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 155 / 5e-41 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 151 / 2e-39 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 150 / 5e-39 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.015G053300 [exp] 146 / 4e-37 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.002G081400 [exp] 144 / 5e-37 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018709 [exp] 900 / 0 AT5G43100 841 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024792 [exp] 899 / 0 AT5G43100 839 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10019309 [exp] 699 / 0 AT5G43100 712 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10011513 [exp] 668 / 0 AT5G43100 687 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 175 / 2e-47 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 174 / 2e-47 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 173 / 6e-47 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 174 / 2e-45 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 161 / 1e-42 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027001 [exp] 148 / 2e-38 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14541 [poplar] [flax] TAXi_C Xylanase inhibitor C-terminal CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.014G020200.1 pacid=42763232 polypeptide=Potri.014G020200.1.p locus=Potri.014G020200 ID=Potri.014G020200.1.v4.1 annot-version=v4.1 ATGGCTTACTCCTCCTCCTCCTCCTCCTCTATCATGATCTCTTACTCCTTAATTTTATTAAATCTCTACGCCATCGTTTCTTCAACTTCCGATTTCAACA ATCGCCACCATCCCACGATACTTCCTCTCCTCCTCTCAACCCCTAACATCTCCGCTCACCGGATGCCCTTCGACGGCCACTACAGCCGGCGCCATCTCCA GAATTCCGAGCTCCCTAACGCTCGCATGCGCCTCTTTGACGATCTCCTCTCTAACGGTTATTATACAACGCGGCTGTTTATTGGGACGCCTCCACAGGAA TTTGCTCTTATTGTGGATACAGGAAGTACTGTGACATATGTTCCGTGCTCTAGCTGTGAACAATGCGGCAAGCATCAGGATCCGAGGTTTCAACCGGATT TGTCTAGTACTTATCGGCCTGTAAAGTGCAACCCAAGTTGTAATTGTGATGATGAGGGAAAGCAGTGTACTTATGAGAGACGCTATGCAGAGATGAGCTC GAGCAGTGGTGTGATTGCTGAGGATGTTGTTTCATTTGGAAATGAAAGCGAGCTTAAACCTCAACGTGCTGTTTTCGGTTGTGAAAATGTGGAAACTGGT GATCTTTACAGCCAACGTGCTGATGGGATAATGGGTTTGGGTCGTGGTCGGCTCAGTGTTGTTGATCAACTTGTTGACAAGGGTGTTATTGGTGATTCGT TTTCGTTGTGTTATGGTGGGATGGATGTGGGTGGGGGTGCGATGGTACTTGGTCAGATTTCTCCTCCCCCCAACATGGTTTTTTCCCATTCCAACCCTTA TCGCAGTCCATATTACAATATTGAGCTGAAAGAACTACATGTAGCTGGGAAGCCATTGAAATTAAAACCAAAAGTCTTTGATGAAAAGCATGGAACAGTT TTGGACAGTGGAACTACATACGCTTACTTTCCAGAAGCAGCATTTCATGCGTTAAAAGATGCTATTATGAAGGAAATCCATCATCTCAAGCAGATCCCGG GCCCTGATCCAAATTACCATGATATTTGCTTTTCTGGTGCTGGAAGGGAGGTCTCTCATCTGTCAAAAGTTTTTCCAGAAGTCAATATGGTGTTTGGCAG TGGTCAAAAGCTGTCACTGTCTCCAGAGAATTATCTCTTCCGGCACACAAAGGTCAGCGGTGCATATTGCCTGGGTATTTTCCAGAATGGAAATGATCTG ACTACTCTTTTAGGAGGAATTGTTGTCCGTAACACACTAGTGACTTACGATCGAGAGAATGATAAAATTGGCTTCTGGAAAACTAACTGTTCTGAACTAT GGAAGAGTTTGCAAGTTCCTGGTGTGCCTGCTTCAGCACCTGTACTTTCCCCTAGCAGTAATAGAAGTCAAGAAATGCCTCCTGCGCAAGCTCCAAGCAG TATGCCATTTTTCCATCCAGGTGAAATTCGAATTGGAATTATATCGTTTGATATGTTGATCAGTGCCAACAACTCAAACACAAAGCCCAACTTCACAGAA GTGGCAGAGTTCATTGCCCATGAGTTGGAAGTTGATAATTTACAGGTTCACATGTTGAATTTCACGTCGACAGGAAATAATTATCTTGTTAAATGGGCCA TCCTTCCTGCTGAATCTGCTGATTACATTTCCAATACCACAGCAATGAAAATAATTCAGCAATTAAGTGAGCATCGATTACACTTTCCTGAGAGATTTGG AAGCTATGAGTTAGTCAAATGGAAGTTTGAGCCTCAAAAGAACAGGACATGGTGGCAGCAACATTTTGTGGCCGTGACTGTTGGAGTTGTTGTTACCCTG GTCGTTAGTTTATTAAGTATTGGCCTATGGTTGGTCTGGAGACGTCAAAAAGCGCTTGGAACGTATGTGCCTGTTGGTGCCGTTGGTCCCGAGCAAGAAC TTCAGCCTTTGTGA
AA sequence Show only first row Show all	>Potri.014G020200.1 pacid=42763232 polypeptide=Potri.014G020200.1.p locus=Potri.014G020200 ID=Potri.014G020200.1.v4.1 annot-version=v4.1 MAYSSSSSSSIMISYSLILLNLYAIVSSTSDFNNRHHPTILPLLLSTPNISAHRMPFDGHYSRRHLQNSELPNARMRLFDDLLSNGYYTTRLFIGTPPQE FALIVDTGSTVTYVPCSSCEQCGKHQDPRFQPDLSSTYRPVKCNPSCNCDDEGKQCTYERRYAEMSSSSGVIAEDVVSFGNESELKPQRAVFGCENVETG DLYSQRADGIMGLGRGRLSVVDQLVDKGVIGDSFSLCYGGMDVGGGAMVLGQISPPPNMVFSHSNPYRSPYYNIELKELHVAGKPLKLKPKVFDEKHGTV LDSGTTYAYFPEAAFHALKDAIMKEIHHLKQIPGPDPNYHDICFSGAGREVSHLSKVFPEVNMVFGSGQKLSLSPENYLFRHTKVSGAYCLGIFQNGNDL TTLLGGIVVRNTLVTYDRENDKIGFWKTNCSELWKSLQVPGVPASAPVLSPSSNRSQEMPPAQAPSSMPFFHPGEIRIGIISFDMLISANNSNTKPNFTE VAEFIAHELEVDNLQVHMLNFTSTGNNYLVKWAILPAESADYISNTTAMKIIQQLSEHRLHFPERFGSYELVKWKFEPQKNRTWWQQHFVAVTVGVVVTL VVSLLSIGLWLVWRRQKALGTYVPVGAVGPEQELQPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43100			Eukaryotic aspartyl protease f...		Potri.014G020200 [exp]	0	1
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.001G241600 [exp]	1.00	0.7736
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Potri.001G206700 [exp]	1.41	0.7453
AT5G01960			RING/U-box superfamily protein...		Potri.016G141200 [exp]	2.23	0.7165
AT1G60995			unknown protein		Potri.001G211700 [exp]	4.24	0.7322
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G130800 [exp]	5.29	0.7231
AT1G23710			Protein of unknown function (D...		Potri.015G076400 [exp]	7.48	0.7036
AT2G23140			RING/U-box superfamily protein...		Potri.007G051000 [exp]	8.12	0.6645
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Potri.008G101200 [exp]	21.63	0.7080
AT1G24560			unknown protein		Potri.008G183800 [exp]	29.49	0.6952
AT4G33890			unknown protein		Potri.009G090400 [exp]	30.59	0.6699

Compare expression of checked genes

Potri.014G020200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.