Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01450 116 / 1e-28 RING/U-box superfamily protein (.1) AT4G24204 94 / 2e-22 RING/U-box superfamily protein (.1.2.3) AT2G38220 94 / 8e-21 RING/U-box superfamily protein (.1) AT2G38195 89 / 4e-19 RING/U-box superfamily protein (.1.2) AT2G38185 89 / 5e-19 RING/U-box superfamily protein (.1.2.3.4) AT1G54150 53 / 2e-07 E3 Ubiquitin ligase family protein (.1) AT5G19080 50 / 1e-06 RING/U-box superfamily protein (.1) AT4G14365 49 / 2e-06 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT1G63900 47 / 1e-05 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT1G59560 46 / 3e-05 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G116300 [exp] 155 / 1e-42 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.006G100400 [exp] 146 / 2e-39 AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4) Potri.007G050500 [exp] 107 / 1e-27 AT4G24204 81 / 4e-20 RING/U-box superfamily protein (.1.2.3) Potri.001G251900 [exp] 99 / 1e-22 AT5G01450 327 / 7e-108 RING/U-box superfamily protein (.1) Potri.001G168700 [exp] 57 / 7e-09 AT1G54150 301 / 1e-99 E3 Ubiquitin ligase family protein (.1) Potri.003G065500 [exp] 56 / 2e-08 AT1G54150 341 / 3e-115 E3 Ubiquitin ligase family protein (.1) Potri.014G138000 [exp] 49 / 3e-06 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.010G049600 [exp] 48 / 9e-06 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.003G156400 [exp] 47 / 2e-05 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002487 [exp] 131 / 9e-34 AT5G01450 347 / 5e-115 RING/U-box superfamily protein (.1) Lus10010392 [exp] 89 / 2e-20 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10004813 [exp] 79 / 2e-15 AT2G38185 309 / 2e-100 RING/U-box superfamily protein (.1.2.3.4) Lus10000533 [exp] 57 / 1e-08 AT1G54150 349 / 5e-119 E3 Ubiquitin ligase family protein (.1) Lus10003551 [exp] 48 / 3e-06 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10027994 [exp] 47 / 2e-05 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10008163 [exp] 47 / 2e-05 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10009035 [exp] 45 / 8e-05 AT3G23280 524 / 0.0 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009674 [exp] 45 / 8e-05 AT3G23280 499 / 6e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10034030 [exp] 43 / 0.0004 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) CL0229 [poplar] [flax] PF16040 [poplar] [flax] DUF4792 Domain of unknown function (DUF4792) CL0229 [poplar] [flax] PF16041 [poplar] [flax] DUF4793 Domain of unknown function (DUF4793)
Representative CDS sequence Show only first row Show all	>Potri.014G020900.1 pacid=42763883 polypeptide=Potri.014G020900.1.p locus=Potri.014G020900 ID=Potri.014G020900.1.v4.1 annot-version=v4.1 ATGCATAGGCCAGTGATGCCACCTCCGGGGCATTCTCCTCAGAGATGGAAAGAAAGTTGGGGACGGTTAATTGCCTGTTTGACAATATGGATATGTGTTT CAGTGAGTCTGCGATATGGGTATTTCGGGGATTCTCGTATGGTGCTTGGACCTAGCTCATCAAGGTTGATGAAGGCAAGTTCTGTATTTGTAGACCATGT TGAAGTGAGAGATGAAGATAAGAAAGGGGTTCTTTTATATGGGTTCTACGAGAAGCCTGAGTTAAGCTTCGAAACGAATTGGAGCGTAGCGGATTATATG ATTGTTGCATCTTACAGTCGAAAGGGATTTTCCTTGTGGTTGAACAAGGGTTCTAAGATCCGAATGAGATGGGAAGCTCGAACCAGTATTTTAAATCAAC TTCAAGTGGTGATGATAAAAGGAGAACGAAAGTATGAAACATTGCTTCCAAAACAGACGAGTTCCCCTGATGCCCTCAACCTCAGCGAACCTCTGAATGG TAAAGAAGCTGAATACACGATCGAGGAGGACAACAGGTACTATCTTGGTCTGATAAACACCAATCCTAAGAATATCATAACGACATTGAGTGTAAATGTC ACATCCAAGATGTATGAGCTATCAAAAGCTAGGAACATGTGTTCAACGACACAGGGATCTTGCCGGCTTAAACTTCTGTTTCCCAAAACTCAATACGTTG TGGTGACAACTCCTGATAATGGAGATATAAATGGATGGAATATCGAGGTAGCTTTTGTGGCTCGTGCAATAATTTACGTCGCGATTTTAGGAGCTATCGT CATCATTATTTTCCTGATATTGAAATATCTTGGCGCTTGTGATACTGATCAGAGTACTAACCTAGTAGAAACAGCTACATGGCAAGCCTCTGAACCTTCT GAAACCGAACCTATAATGCCAGCTAAGTCGGTTCGTTTAACATACGGAACAAATGAAGAAGATGATGAAGGATCATCGTGTAGCTCTTCAGAGGATTTGT ATGATGCAAAATTATGTGTAATTTGTTATGATGATCAACGGAACTGTTTTTTCGTTCCTTGTGGCCATTGTGCCACATGCTATGACTGTGCTCAGAGGAT AATGGAGGAGGACAACAAGATGTGTCCAATATGTAGAAGGCTTATTCACAAAGTAAGAAGATTATTTACTTCTTAG
AA sequence Show only first row Show all	>Potri.014G020900.1 pacid=42763883 polypeptide=Potri.014G020900.1.p locus=Potri.014G020900 ID=Potri.014G020900.1.v4.1 annot-version=v4.1 MHRPVMPPPGHSPQRWKESWGRLIACLTIWICVSVSLRYGYFGDSRMVLGPSSSRLMKASSVFVDHVEVRDEDKKGVLLYGFYEKPELSFETNWSVADYM IVASYSRKGFSLWLNKGSKIRMRWEARTSILNQLQVVMIKGERKYETLLPKQTSSPDALNLSEPLNGKEAEYTIEEDNRYYLGLINTNPKNIITTLSVNV TSKMYELSKARNMCSTTQGSCRLKLLFPKTQYVVVTTPDNGDINGWNIEVAFVARAIIYVAILGAIVIIIFLILKYLGACDTDQSTNLVETATWQASEPS ETEPIMPAKSVRLTYGTNEEDDEGSSCSSSEDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCAQRIMEEDNKMCPICRRLIHKVRRLFTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01450			RING/U-box superfamily protein...		Potri.014G020900 [exp]	0	1
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.002G137200 [exp]	1.00	0.9437
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.013G073300 [exp]	1.41	0.9371	F3H1
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.004G057700 [exp]	2.44	0.9191
					Potri.005G045300 [exp]	3.00	0.8992
AT3G59310			Eukaryotic protein of unknown ...		Potri.003G030800 [exp]	3.16	0.8991
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Potri.006G226100 [exp]	3.46	0.8949
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.002G059200 [exp]	3.46	0.9090
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Potri.001G291800 [exp]	3.87	0.9102
					Potri.004G212550 [exp]	4.89	0.9168
					Potri.012G082300 [exp]	5.29	0.8916

Compare expression of checked genes

Potri.014G020900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.