Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYCA3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47230 484 / 3e-172 CYCA3;4 CYCLIN A3;4 (.1.2) AT5G43080 473 / 3e-168 CYCA3;1 Cyclin A3;1 (.1) AT1G47210 460 / 6e-163 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT1G47220 377 / 9e-131 CYCA3;3 Cyclin A3;3 (.1) AT1G44110 323 / 1e-107 CYCA1;1 Cyclin A1;1 (.1) AT5G11300 317 / 2e-105 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT1G80370 311 / 3e-103 CYCA2;4 Cyclin A2;4 (.1) AT1G15570 311 / 3e-103 CYCA2;3 CYCLIN A2;3 (.1) AT5G25380 309 / 2e-102 CYCA2;1 cyclin a2;1 (.1) AT1G77390 288 / 4e-94 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G121500 [exp] 631 / 0 AT1G47230 472 / 1e-167 CYCLIN A3;4 (.1.2) Potri.009G093100 [exp] 357 / 6e-122 AT5G43080 288 / 9e-95 Cyclin A3;1 (.1) Potri.002G080000 [exp] 329 / 1e-109 AT1G44110 593 / 0.0 Cyclin A1;1 (.1) Potri.018G034100 [exp] 326 / 2e-108 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.001G177100 [exp] 324 / 8e-108 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.005G181400 [exp] 321 / 2e-106 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.006G247200 [exp] 318 / 2e-105 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.003G058200 [exp] 314 / 1e-103 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.002G010000 [exp] 186 / 5e-55 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018715 [exp] 477 / 7e-169 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10024822 [exp] 475 / 4e-168 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10029700 [exp] 325 / 8e-109 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10028544 [exp] 317 / 7e-106 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10008103 [exp] 318 / 1e-105 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10042739 [exp] 315 / 1e-103 AT1G44110 508 / 1e-177 Cyclin A1;1 (.1) Lus10014199 [exp] 307 / 2e-102 AT1G44110 451 / 2e-157 Cyclin A1;1 (.1) Lus10013886 [exp] 288 / 2e-95 AT5G43080 283 / 2e-93 Cyclin A3;1 (.1) Lus10026598 [exp] 244 / 1e-79 AT5G43080 243 / 9e-80 Cyclin A3;1 (.1) Lus10026803 [exp] 187 / 3e-55 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G021100.1 pacid=42762280 polypeptide=Potri.014G021100.1.p locus=Potri.014G021100 ID=Potri.014G021100.1.v4.1 annot-version=v4.1 ATGAATTCAATTTCAGAGAAAGAGAACTGTGTCCGCATTACTCGCGCTGCCAAAAAGAGGGCGGCGGCGCTGGCTTCAGCCGAGGACCGGCCCTTGAATA AGAAGAGGGTTGTGTTGGGAGAACTTCCCAACTTATCGAACACCACCGTTTCAGTGAATGAGGTACATAAGCAGAAAGCAAAGACAAAGTCAAATACCAG CAAGAGGACTTTAACGAAGAAGGAGGGTGTTTTCAAAGAGGATGTTGATGGGAAACCTGAAGATCCCCAAATGTGTGCACCATATGCATCTGATATTTAT GAGTATCTTCATAAAATGGAGGTGGATCCAAAAAGAAGGCCTTTGCCTGATTACATTGAGAAGGTTCAAAAAGATGTTAGCCCCAATATGAGAGGGATTT TGGTGGATTGGTTGGTTGAGGTTGCGGAGGAGTACAAGATTGTCTCTGACACTTTGTATCTTACTGTTTCTTACATTGATAGATTCTTGTCTTTCAATGT TCTAAATAGGCAGAGACTTCAGCTTCTTGGTGTTTCTGCTATGCTTATTGCCTCAAAGTATGAAGAAATCAACCCTCCAAATGTAGAAGATTTTTGCTAC ATAACAGATAATACGTACACCAAGGAAGAGGTGGTTAAAATGGAAGCTGATATACTTAAATCTTTGAAATTTGAAGTGGGAAATCCTACAATAAAGACAC TCTTAAGGAGATTCACAAGGGCAGCACAAGAGGATTACAAAACTTCGGATTTGCAGTTTGAGTTCCTGGGATTTTACCTTGCCGAGTTGAGCTTGTTGGA TTACAATTGTGTGAAATATCTACCTTCTTTGGTGGCTGCTTCTGTTATTTTTCTTACAAGATTTCTGATGCGACCCAAGACACATCCTTGGAGTTCAACC TTGCAACAATACACTGGATACAAAGCAACGGATCTAAAGGATTGTGTTCTCATCATACATGACTTGTATTTGAGTAGAAGAGGGGGTGGGTTACAAGCTG TAAGAGAAAAATATAAGCAGCATAAGTTCAAGTGCGTGGCGAACATGCCTTCCCCTCCAGAGATACCAGCTTTATATTTTGACGAGGTTTAA
AA sequence Show only first row Show all	>Potri.014G021100.1 pacid=42762280 polypeptide=Potri.014G021100.1.p locus=Potri.014G021100 ID=Potri.014G021100.1.v4.1 annot-version=v4.1 MNSISEKENCVRITRAAKKRAAALASAEDRPLNKKRVVLGELPNLSNTTVSVNEVHKQKAKTKSNTSKRTLTKKEGVFKEDVDGKPEDPQMCAPYASDIY EYLHKMEVDPKRRPLPDYIEKVQKDVSPNMRGILVDWLVEVAEEYKIVSDTLYLTVSYIDRFLSFNVLNRQRLQLLGVSAMLIASKYEEINPPNVEDFCY ITDNTYTKEEVVKMEADILKSLKFEVGNPTIKTLLRRFTRAAQEDYKTSDLQFEFLGFYLAELSLLDYNCVKYLPSLVAASVIFLTRFLMRPKTHPWSST LQQYTGYKATDLKDCVLIIHDLYLSRRGGGLQAVREKYKQHKFKCVANMPSPPEIPALYFDEV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.014G021100 [exp]	0	1	CYCA3.2
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Potri.015G057300 [exp]	1.73	0.9475
AT3G02920		ATRPA32B	Replication protein A, subunit...		Potri.006G167600 [exp]	2.44	0.9298
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Potri.004G131600 [exp]	2.44	0.9513
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Potri.009G121500 [exp]	4.24	0.9476
AT5G46740		UBP21	ubiquitin-specific protease 21...		Potri.001G142000 [exp]	4.47	0.9469	Pt-UBP21.2
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Potri.001G074000 [exp]	5.47	0.9402
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Potri.004G031300 [exp]	6.32	0.9289
AT5G20850		ATRAD51	RAS associated with diabetes p...		Potri.006G135200 [exp]	7.34	0.9288
AT2G41450			N-acetyltransferases;N-acetylt...		Potri.006G045100 [exp]	9.79	0.9255
AT2G20980		MCM10	minichromosome maintenance 10 ...		Potri.009G134500 [exp]	11.00	0.9266

Compare expression of checked genes

Potri.014G021100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.