Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10600 436 / 7e-149 CYP81K2 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) AT5G10610 426 / 6e-145 CYP81K1 "cytochrome P450, family 81, subfamily K, polypeptide 1", cytochrome P450, family 81, subfamily K, polypeptide 1 (.1) AT4G37320 387 / 5e-130 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT3G28740 380 / 3e-127 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT4G37370 379 / 9e-127 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37340 374 / 6e-125 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37330 373 / 2e-124 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37360 372 / 4e-124 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT2G23190 373 / 7e-124 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT2G23220 368 / 3e-122 CYP81D6 "cytochrome P450, family 81, subfamily D, polypeptide 6", cytochrome P450, family 81, subfamily D, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028100 [exp] 510 / 7e-178 AT5G10610 374 / 2e-124 "cytochrome P450, family 81, subfamily K, polypeptide 1", cytochrome P450, family 81, subfamily K, polypeptide 1 (.1) Potri.017G028450 [exp] 510 / 1e-177 AT5G10600 374 / 2e-124 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.017G028200 [exp] 510 / 1e-177 AT5G10600 374 / 2e-124 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.017G028150 [exp] 509 / 1e-177 AT5G10600 373 / 4e-124 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.002G121900 [exp] 503 / 4e-175 AT5G10600 490 / 5e-170 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.017G023850 [exp] 491 / 2e-170 AT5G10610 361 / 7e-120 "cytochrome P450, family 81, subfamily K, polypeptide 1", cytochrome P450, family 81, subfamily K, polypeptide 1 (.1) Potri.014G021400 [exp] 489 / 6e-170 AT5G10600 437 / 2e-149 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.014G021800 [exp] 418 / 9e-142 AT4G37360 458 / 1e-157 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) Potri.002G121200 [exp] 412 / 7e-140 AT4G37340 465 / 1e-160 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009909 [exp] 441 / 1e-150 AT5G10600 481 / 2e-166 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Lus10018717 [exp] 397 / 1e-133 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024819 [exp] 394 / 2e-132 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10020437 [exp] 392 / 1e-131 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024818 [exp] 384 / 1e-128 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024816 [exp] 381 / 4e-127 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024820 [exp] 378 / 6e-126 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10011958 [exp] 362 / 8e-120 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10027614 [exp] 358 / 2e-119 AT4G37370 496 / 6e-174 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10010373 [exp] 352 / 8e-117 AT4G37370 375 / 3e-126 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G021700.1 pacid=42762418 polypeptide=Potri.014G021700.1.p locus=Potri.014G021700 ID=Potri.014G021700.1.v4.1 annot-version=v4.1 ATGCTTCTCTTGGAAAACATGCTGTCTTACTGCTGCCTTGCTTTCTTCTTCCTAATTTTTCTTGTAATCAAATATGTATTCCATGGTAACAAAAACTTGC CACCAAGTCCTCCTTCTCTTCCAATAATAGGCCATCTCCACCTTCTCAAGCCACCACTACACCAAACGCTACAGACTTTATTGCAGCAATATGGCCCAGT TCTTTCCCTTAAAGCAGGCTGCAGGTCTATGCTTGTTCTTAGTTCTCCATCAGCTGTTGAAGAATGTTTCACAAAGAACGACGTGGTCCTTTCCAACAGG CCTACTTTCTTAGCCGGAGATCATTTAACTTACAACTATACCACTATTATCTTCTCTCCATATGGCCATCTTTGGCGTACCCTCAGGCGCTTCGCCGTCC TTGAAATGTTCTCTCAGAAAGGCCTCAATAAGTTCTCTGCAGTCCGCAAAGAAGAAGTTTGCTCCCTTCTCCGCCAATTGTCTAAAGTCTCCTGTAGTGG CAACAAAAAGGTGGATTTGCATTATTTCTTCTCACTCCTCAGTTTCAATGTCGCTATGAGGATGTCTGCTGGTAAGAAATGTATTGAAGAGGAGGTTGCC TGCTCGGATTTGGGCAAGCAGGATCTTACGGAACTCAAAAAGATATTCCATCCACCTTTATCCACGGGTTTGTGTGATTTCTTTCCTGCTTTGAAATGGA TCAATTACAAAGGGTTTGAGAAGAGTGTTATCAAGGTGCGTGATGGGAGGGATGGATTTTCGCAAGACTTGATAGATGAGATTCGACAAAAGAAAACCAG TTCATGTTCAAGTCCTGATGCAGGACCGGAGAAGACAACCATGATCGAAACTTTATTGTCTCTCCAAGAACAAGAACCTGATTTCTATACAGATGATATC ATCAAGGGTCTCGTAGTGGCAATGTTTTCTGCAGGGACAGATACAGTAGCTGTTACCATGGAATGGGCAATGTCACTTCTGCTGAATCATCCAGAGATAT TGCAGAAGGTAAGAGAAGAGATTGATAGTCAAGTTGGGCATACGCGCTTGGTAGAGGAGGTGGATCTTCCTAAGCTAAAATATCTCCGTTGCGTTATCAA TGAGACGCTTCGGCTGTATCCTGTTGTGCCACTCTTACTCCCACGTTGTCCATCTGAAGACTGTACCGTGGCAGGATACAAGGTTCCAAAAGGCACAATC CTACTGGTGAATGCTTTCGCCATGCACAGGGATCCCAAGATGTGGGAACAACCTGACAGGTTCAAGCCAGAGAGATTTGAAGCGACCGAGGAGGAAAAGG AAGGCATCAAGTTTATTCCATTTGGTATGGGAAGGAGGGCTTGCCCAGGATCTAACATGGGTATGCGCGCAATCATGTTGGCAATGGCTGCACTTTTTCA GTGCTTTGAGTGGGAGAGGACTGGACAGGAGATGGTTGATATGACAGTAGCAGCAGCAATTTCTATGGTTAAGGCTAAGCCTTTGGAGGCTTTTTGTAAA CCATATCATTCCATGGCTAACCTATTCTCCCAGCTCTAG
AA sequence Show only first row Show all	>Potri.014G021700.1 pacid=42762418 polypeptide=Potri.014G021700.1.p locus=Potri.014G021700 ID=Potri.014G021700.1.v4.1 annot-version=v4.1 MLLLENMLSYCCLAFFFLIFLVIKYVFHGNKNLPPSPPSLPIIGHLHLLKPPLHQTLQTLLQQYGPVLSLKAGCRSMLVLSSPSAVEECFTKNDVVLSNR PTFLAGDHLTYNYTTIIFSPYGHLWRTLRRFAVLEMFSQKGLNKFSAVRKEEVCSLLRQLSKVSCSGNKKVDLHYFFSLLSFNVAMRMSAGKKCIEEEVA CSDLGKQDLTELKKIFHPPLSTGLCDFFPALKWINYKGFEKSVIKVRDGRDGFSQDLIDEIRQKKTSSCSSPDAGPEKTTMIETLLSLQEQEPDFYTDDI IKGLVVAMFSAGTDTVAVTMEWAMSLLLNHPEILQKVREEIDSQVGHTRLVEEVDLPKLKYLRCVINETLRLYPVVPLLLPRCPSEDCTVAGYKVPKGTI LLVNAFAMHRDPKMWEQPDRFKPERFEATEEEKEGIKFIPFGMGRRACPGSNMGMRAIMLAMAALFQCFEWERTGQEMVDMTVAAAISMVKAKPLEAFCK PYHSMANLFSQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.014G021700 [exp]	0	1
AT5G62350			Plant invertase/pectin methyle...		Potri.015G128700 [exp]	4.89	0.7755
AT1G35710			Protein kinase family protein ...		Potri.002G258400 [exp]	8.71	0.7890
AT4G30900			DNAse I-like superfamily prote...		Potri.018G106700 [exp]	9.16	0.7501
AT2G27430			ARM repeat superfamily protein...		Potri.011G065300 [exp]	13.71	0.7675
AT1G76520			Auxin efflux carrier family pr...		Potri.011G145700 [exp]	21.63	0.7291
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Potri.009G084600 [exp]	22.97	0.7413
AT3G57120			Protein kinase superfamily pro...		Potri.008G037401 [exp]	28.46	0.7354
AT5G17680			disease resistance protein (TI...		Potri.019G069500 [exp]	30.41	0.7561
AT1G67480			Galactose oxidase/kelch repeat...		Potri.013G104300 [exp]	31.65	0.6196
AT5G63930			Leucine-rich repeat protein ki...		Potri.019G025500 [exp]	39.49	0.7331

Compare expression of checked genes

Potri.014G021700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.