Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37360 458 / 8e-158 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37340 458 / 1e-157 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37370 452 / 2e-155 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37320 450 / 1e-154 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT5G36220 435 / 1e-148 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37330 432 / 2e-147 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37430 421 / 5e-143 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT4G37400 416 / 3e-141 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT3G28740 416 / 4e-141 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT5G57220 413 / 5e-140 CYP81F2 "cytochrome P450, family 81, subfamily F, polypeptide 2", cytochrome P450, family 81, subfamily F, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G121400 [exp] 505 / 4e-176 AT4G37370 470 / 1e-162 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121200 [exp] 500 / 4e-174 AT4G37340 465 / 1e-160 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) Potri.002G121100 [exp] 491 / 1e-170 AT4G37370 429 / 2e-146 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G006000 [exp] 490 / 3e-170 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020500 [exp] 486 / 1e-168 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.008G205200 [exp] 485 / 3e-168 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 485 / 4e-168 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020600 [exp] 481 / 8e-167 AT4G37370 479 / 4e-166 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007000 [exp] 482 / 9e-167 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024819 [exp] 627 / 0 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024818 [exp] 606 / 0 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024820 [exp] 592 / 0 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10020437 [exp] 505 / 4e-176 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10018717 [exp] 504 / 3e-175 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024816 [exp] 482 / 8e-167 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10041643 [exp] 478 / 8e-165 AT4G37320 433 / 6e-148 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024078 [exp] 472 / 1e-162 AT4G37320 437 / 3e-149 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10011958 [exp] 457 / 4e-157 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10018711 [exp] 438 / 1e-149 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G021800.1 pacid=42763428 polypeptide=Potri.014G021800.1.p locus=Potri.014G021800 ID=Potri.014G021800.1.v4.1 annot-version=v4.1 ATGGAGGTATCTCACTGGTTCAACTTTGCAGCACTATTCTTCTTCTTTGTGCTTGCATCAAAGCTTGTTATATACAAACTTGGAAATCCCAAAAACCTCC CACCTAGTCCACCTTCCCGTCCTATCATAGGGCATCTCCATTTATTAAAGCAACCAATTCATAGAACTCTGTGCGAGCTTTCTAAGAAGTATGGTGACAT ACTGTTTCTCCGATTTGGGGCTCGTAAAGTCCTTGTAATCTCTTCACCATCAGCCGTTGAAGAGTGCTTTACTAGAAAAGATGTAATATTTGCTAACCGC CCTCGTACACTAGCTGGAAAACATCTCAATTACAACTCGACAACCATGGGTTTCTCTTCTTATGGTGAGCATTGGCGCAACCTCAGGCGCTTAACAACCA TTGAGCTCTTCTCTGCAAGTCGTGTTGCCTCGTTCTCTGATATTAGAAAAGAGGAAGTTCAGCTATTGCTAAACCAATTGTTTCGGGATTCCAGCAAACA ACAGGCTAAGGTGGGGCTTACAGCAAGTTTTATGGAGCTTACATTCAATGTTATGATGAGAATGATTGCAGGAAAACGTTATTATGGAAAAGAAGTGGTG GATGAAGAAGCGGGACAGTTTCAGAATATTATAAAAGAAATGGAGGCGCTGCGAGGGAGTTCTAATATGAATGATTTCTTTCCAGTACTGCAATGGATAG ATTTCCAAGGTTTGGAGAAGAGAATGATGGGGTTGAAGAAGAAGATGGACAAATTCTTGCAGGATCTCATCGAGGAGCACCAGAAAGTGAGGAGTCAGTC ATCTCAGTCCACCAAGATAACCGGTTTGGGCAACCAAAAGAGAAACATGACACTTATTGATGTTATGTTATCGTTGAAAGAGACAGAACCTGAATTCTAT ACTGATCAAACCATAAAAGGTGTAATCATGTCAACACTAACCGCAGGAAGCCAAACTTCAGCAGCTACCTTAGAGTGGGCAATGTCGCTTCTCCTTAACA ACCCGGAAACAATGCGAAAGGCTTCTGAAGAGGTAGATGCTATCGTTGGAACAGAGCACATATTGGATGAAGTAGATGTAACAAAGCTCAGTTACCTCCA AAACATAATTAACGAGACATTTAGGCTCTTTCCACCTGCGCCGCTTCTTTTACCACATGAATCTTCCGAGGACTGCACTATTAGTGGATTTCATGTGCCC CGAGGCACAATGTTACTGGTCAATACTTGGAGCATTCATAGAGATACCAAGCTGTGGGTGGAGCCAACAAAATTCATGCCGGAGAGATTTGAAGGTGGAG AAGGTGAAGGGTATAAACTGCTTCCATTTGGTGCTGGAAGGCGGGCTTGTCCTGGGGCTGGTCTAGCCAAGCGAATCATAGGCCTGACACTAGGTGTCTT GATTCAGTGCTTCGAGTGGGATAGAGTTAGCAAAGAGGAGATTAATCTGACAGAAGGAACAGGGCTTACCATTCCCAAAGCTGAACCACTGGAGGCGTTA TGCAGACCTCGCCAATCCATGGTCAACCTCCTCTCTTCCATGTGA
AA sequence Show only first row Show all	>Potri.014G021800.1 pacid=42763428 polypeptide=Potri.014G021800.1.p locus=Potri.014G021800 ID=Potri.014G021800.1.v4.1 annot-version=v4.1 MEVSHWFNFAALFFFFVLASKLVIYKLGNPKNLPPSPPSRPIIGHLHLLKQPIHRTLCELSKKYGDILFLRFGARKVLVISSPSAVEECFTRKDVIFANR PRTLAGKHLNYNSTTMGFSSYGEHWRNLRRLTTIELFSASRVASFSDIRKEEVQLLLNQLFRDSSKQQAKVGLTASFMELTFNVMMRMIAGKRYYGKEVV DEEAGQFQNIIKEMEALRGSSNMNDFFPVLQWIDFQGLEKRMMGLKKKMDKFLQDLIEEHQKVRSQSSQSTKITGLGNQKRNMTLIDVMLSLKETEPEFY TDQTIKGVIMSTLTAGSQTSAATLEWAMSLLLNNPETMRKASEEVDAIVGTEHILDEVDVTKLSYLQNIINETFRLFPPAPLLLPHESSEDCTISGFHVP RGTMLLVNTWSIHRDTKLWVEPTKFMPERFEGGEGEGYKLLPFGAGRRACPGAGLAKRIIGLTLGVLIQCFEWDRVSKEEINLTEGTGLTIPKAEPLEAL CRPRQSMVNLLSSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37360		CYP81D2	"cytochrome P450, family 81, s...		Potri.014G021800 [exp]	0	1
AT4G17260			Lactate/malate dehydrogenase f...		Potri.001G122400 [exp]	4.89	0.6736
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037600 [exp]	6.48	0.6871
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Potri.006G270500 [exp]	6.70	0.7190
AT1G67480			Galactose oxidase/kelch repeat...		Potri.013G104300 [exp]	10.58	0.6297
					Potri.008G125400 [exp]	10.58	0.6533
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.003G142100 [exp]	18.97	0.6916
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037400 [exp]	20.71	0.6590
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G096000 [exp]	21.63	0.6304	Pt-ADGT.3
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Potri.001G166400 [exp]	26.05	0.6747
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Potri.006G001100 [exp]	27.49	0.6591

Compare expression of checked genes

Potri.014G021800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.