Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MAF1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47200 114 / 2e-32 WPP2 WPP domain protein 2 (.1) AT5G43070 99 / 2e-26 WPP1 WPP domain protein 1 (.1) AT5G27940 77 / 5e-18 WPP3 WPP domain protein 3 (.1) AT5G19320 59 / 2e-10 RANGAP2 RAN GTPase activating protein 2 (.1) AT3G63130 51 / 1e-07 ATRANGAP1, RANGAP1 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G122000 [exp] 160 / 9e-51 AT1G47200 111 / 1e-31 WPP domain protein 2 (.1) Potri.010G091100 [exp] 65 / 2e-12 AT5G19320 646 / 0.0 RAN GTPase activating protein 2 (.1) Potri.005G209600 [exp] 54 / 9e-09 AT3G63130 667 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Potri.002G052900 [exp] 52 / 5e-08 AT3G63130 664 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009747 [exp] 124 / 3e-36 AT1G47200 119 / 1e-34 WPP domain protein 2 (.1) Lus10042643 [exp] 114 / 2e-32 AT1G47200 125 / 4e-37 WPP domain protein 2 (.1) Lus10010235 [exp] 111 / 3e-31 AT1G47200 124 / 2e-36 WPP domain protein 2 (.1) Lus10010523 [exp] 59 / 3e-10 AT5G19320 666 / 0.0 RAN GTPase activating protein 2 (.1) Lus10034066 [exp] 58 / 4e-10 AT5G19320 669 / 0.0 RAN GTPase activating protein 2 (.1) Lus10006930 [exp] 57 / 1e-09 AT3G63130 712 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2) Lus10014670 [exp] 56 / 4e-09 AT3G63130 717 / 0.0 RAN GTPASE-ACTIVATING PROTEIN 1, RAN GTPase activating protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13943 [poplar] [flax] WPP WPP domain
Representative CDS sequence Show only first row Show all	>Potri.014G021900.1 pacid=42764457 polypeptide=Potri.014G021900.1.p locus=Potri.014G021900 ID=Potri.014G021900.1.v4.1 annot-version=v4.1 ATGTCGGACTCTGAAACTACCCCCACCGTCTCCACCACAGCACCGCCATCAGACGACCACTCCTCTGCGGAGGGTATAAAGAAGCAGGCAAGCGGCGGCT TTTCTTTGCCATCAGACGACCACTACTCTGCGGAGGGTACAATGAAGCAGACAAGCAGCGGCTTTTCTTTTAGCATTTGGCCACCGACTCAACGCACTCG CGACGCGATTATATCCCGTCTAATCGAGACCTTATCCACCACGTCCGTTCTCTCCAAGCGCTACGGTACTATACCTAAAGAAGAGGCCTCCGAAGCCTCC CGCCGCATTGAGGAGGAGGCATTCTCTGGCGCCTCCACCGTGGCTTCCTCCGAGAAGGACGGGCTTGAGGTTCTCCAGCTTTACTCTAAGGAGATCAGTA AACGGATGTTAGAGACCGTCAAGGCTCGGGCTGGATCGGGTGCCAATGGTGACAATAGTGCGACGGAGACAGCGAGCGCTGATGTGACGCCGAAGGCGGT GGCGAATGAAGAGGTTTCGAGCTCTGCTGAGGCTGAAGCTTGA
AA sequence Show only first row Show all	>Potri.014G021900.1 pacid=42764457 polypeptide=Potri.014G021900.1.p locus=Potri.014G021900 ID=Potri.014G021900.1.v4.1 annot-version=v4.1 MSDSETTPTVSTTAPPSDDHSSAEGIKKQASGGFSLPSDDHYSAEGTMKQTSSGFSFSIWPPTQRTRDAIISRLIETLSTTSVLSKRYGTIPKEEASEAS RRIEEEAFSGASTVASSEKDGLEVLQLYSKEISKRMLETVKARAGSGANGDNSATETASADVTPKAVANEEVSSSAEAEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47200		WPP2	WPP domain protein 2 (.1)		Potri.014G021900 [exp]	0	1	MAF1.2
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Potri.001G267300 [exp]	1.00	0.9101
AT5G23750			Remorin family protein (.1.2)		Potri.001G107000 [exp]	5.47	0.8974
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Potri.006G252100 [exp]	6.63	0.8619
AT1G72220			RING/U-box superfamily protein...		Potri.002G101800 [exp]	9.00	0.8906
AT2G20230			Tetraspanin family protein (.1...		Potri.002G253500 [exp]	9.64	0.8312
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.015G012500 [exp]	9.79	0.8877
AT4G37235			Uncharacterised protein family...		Potri.007G033600 [exp]	10.00	0.8849
AT4G32330			TPX2 (targeting protein for Xk...		Potri.018G027500 [exp]	10.58	0.8539
AT4G30600			signal recognition particle re...		Potri.006G183600 [exp]	17.29	0.8614
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.010G067100 [exp]	18.00	0.8616

Compare expression of checked genes

Potri.014G021900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.