Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24210 183 / 1e-59 SLY1 SLEEPY1, F-box family protein (.1) AT5G48170 61 / 6e-12 SNE, SLY2 SNEEZY, SLEEPY2, F-box family protein (.1) AT1G21760 47 / 2e-06 ATFBP7 F-box protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G122300 [exp] 281 / 7e-98 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1) Potri.014G165700 [exp] 67 / 3e-14 AT5G48170 144 / 9e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Potri.002G054500 [exp] 54 / 1e-08 AT2G27310 122 / 2e-31 F-box family protein (.1) Potri.004G076800 [exp] 47 / 2e-06 AT5G04010 122 / 9e-33 F-box family protein (.1) Potri.006G044801 [exp] 44 / 3e-05 AT5G04010 114 / 8e-30 F-box family protein (.1) Potri.002G082500 [exp] 43 / 4e-05 AT1G21760 474 / 7e-170 F-box protein 7 (.1) Potri.005G208200 [exp] 43 / 4e-05 AT2G27310 130 / 3e-34 F-box family protein (.1) Potri.005G178600 [exp] 43 / 6e-05 AT1G21760 479 / 6e-172 F-box protein 7 (.1) Potri.004G119500 [exp] 40 / 0.0003 AT5G39250 347 / 8e-122 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042637 [exp] 241 / 2e-82 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1) Lus10012335 [exp] 65 / 3e-13 AT5G48170 145 / 6e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10001172 [exp] 64 / 7e-13 AT5G48170 164 / 2e-52 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10006381 [exp] 60 / 2e-11 AT5G48170 140 / 5e-43 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10028024 [exp] 47 / 4e-06 AT2G27310 158 / 4e-45 F-box family protein (.1) Lus10042716 [exp] 46 / 8e-06 AT1G69740 644 / 0.0 Aldolase superfamily protein (.1.2) Lus10003731 [exp] 45 / 2e-05 AT2G27310 160 / 3e-46 F-box family protein (.1) Lus10029676 [exp] 44 / 4e-05 AT1G21760 444 / 5e-156 F-box protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.014G022100.1 pacid=42762306 polypeptide=Potri.014G022100.1.p locus=Potri.014G022100 ID=Potri.014G022100.1.v4.1 annot-version=v4.1 ATGAAGCGCCCACTAGACACCGGACCCGAAATCCACAACAAAACCGACATGAAAATGAAGAAGAAAAGGCACCAAGAAGAAGGAGAAATCAAGGAAGAAA TAGAATCCGAAACCAATACAGGAACTGGGTTTATGAATTTAGACGAGAACTTACTTTTCGAGGTGTTGAAGCATGTAGACGCGAGGACTTTAGGGAGGGC ATCCTGTGTGAGCAAGCAGTGGCACAGGACAGTACAGGACGAGAGGTTATGGGAGCTGATCTGTACCAAGCACTGGGCTAATATTGGCTGTGGTAATCAA CAACTGAGATCTGTTGTTTTAGCTCTTGGTGGGTTTCGTCGACTTCACTCTCAGTATCTCTGGCCCCTGTCAAAACCACACTCAACTCCTGCACCCTCTT CTTCCTCTTCTCCTTCCGCCTGGAACCCGTTCCCGAAGATGATTGGGAACAAGCCACCGGCTAGGTGGGGCAAGGATGAGGTGCATCTGTCTCTGTCTTT GCTTTCAATTCGGTATTATGAGAAGATGAATTTTAGTAACAGAGGAAGGTGA
AA sequence Show only first row Show all	>Potri.014G022100.1 pacid=42762306 polypeptide=Potri.014G022100.1.p locus=Potri.014G022100 ID=Potri.014G022100.1.v4.1 annot-version=v4.1 MKRPLDTGPEIHNKTDMKMKKKRHQEEGEIKEEIESETNTGTGFMNLDENLLFEVLKHVDARTLGRASCVSKQWHRTVQDERLWELICTKHWANIGCGNQ QLRSVVLALGGFRRLHSQYLWPLSKPHSTPAPSSSSSPSAWNPFPKMIGNKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24210		SLY1	SLEEPY1, F-box family protein ...		Potri.014G022100 [exp]	0	1
AT2G22860		ATPSK2	phytosulfokine 2 precursor (.1...		Potri.014G006900 [exp]	1.41	0.9058	Pt-PSK3.2
AT1G28310	DOF	AtDof1. 4	Dof-type zinc finger DNA-bindi...		Potri.004G046600 [exp]	1.41	0.9049
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.010G167600 [exp]	3.46	0.8803
AT3G10760	GARP		Homeodomain-like superfamily p...		Potri.006G034900 [exp]	8.48	0.8606
AT1G69588		CLE45	CLAVATA3/ESR-RELATED 45 (.1)		Potri.010G169300 [exp]	8.77	0.8554
AT2G31670			Stress responsive alpha-beta b...		Potri.001G413500 [exp]	14.96	0.8755
					Potri.017G106601 [exp]	15.00	0.8325
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G014350 [exp]	16.30	0.8538
AT3G61180			RING/U-box superfamily protein...		Potri.002G155200 [exp]	18.46	0.8416
AT1G11120			unknown protein		Potri.011G045900 [exp]	19.44	0.8164

Compare expression of checked genes

Potri.014G022100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.