Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02740 314 / 2e-106 MRG family protein (.1) AT4G37280 309 / 1e-104 MRG family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G049300 [exp] 336 / 2e-115 AT4G37280 417 / 2e-147 MRG family protein (.1) Potri.002G122500 [exp] 220 / 9e-72 AT4G37280 147 / 1e-43 MRG family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011511 [exp] 325 / 4e-111 AT4G37280 449 / 5e-160 MRG family protein (.1) Lus10019312 [exp] 243 / 2e-80 AT4G37280 283 / 4e-96 MRG family protein (.1) Lus10019311 [exp] 53 / 4e-09 AT4G37280 107 / 4e-30 MRG family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05712 [poplar] [flax] MRG MRG CL0049 [poplar] [flax] Tudor PF11717 [poplar] [flax] Tudor-knot RNA binding activity-knot of a chromodomain
Representative CDS sequence Show only first row Show all	>Potri.014G022400.3 pacid=42762259 polypeptide=Potri.014G022400.3.p locus=Potri.014G022400 ID=Potri.014G022400.3.v4.1 annot-version=v4.1 ATGGGAAGCTCAGACACTGGATTAAACAACGATGATGACTCAGCGACCGTGTCAGATGAGTCAAACACAGAGACAGACTCAGACATGAGAACCGAAACCG ACGAGGAATGTCAGTCTTCGCACCCTCCATCTGTATTTGTAAATGATGAGAAGGTCCTCGCTTTTCACTCTGGACAATACTATGAAGCCAAGGTGATAAG AGCTTTATATGAAGAAAACAAATGGGGTTTTTTTGTTCATTACACAGGGTGGAACAAAACTTGGGATGAATGGGTTGGAACGGATCGTTTGCTGAAGCAC ACTGAAGAGAATGTTCAGACGCAGAAAGCCCTCAAAGAACGATTGGAAATGGAGATGAAAACAAAGGCGGTACAGGCACCACAAATGAAACTGAAAAATT CTGGTGTTTCAAGGGGAAGGAAGCGGAAAAATGACAATCTTAATAAGGAAAAAGATCTTGTACCCTTGGAAAAGCTGGTGAATCTCCAAATTCCACCAAC ACTAAAGAAACAACTTGTTGATGATTGTGAATTTATCACTCATCAGAGCAAGCTCGTGAAACTTCCTCGTGCCCCAAATGTCCAAGACATATGTAAGAAG TATTGTGAGTATAGGTCAAAAAAAGATGTCATGATGCCTGAATCAACTGCTGAAATTATGAAAGGTTTGCGCTGTTACTTTGACAAGGCCTTGCCAGCAA TGCTTCTGTATAAAAGTGAGCGGCAACAGTATACTTATGCAATTAGAGATGATGTTTCTCCCTCAATGGTATATGGTGCTGAGCATCTATTACGCCTCTT TGTTAAGTTGCCTGAGTTATTGGTTCATGCAAACATTGAAGAGGAGACACTGACAGAGTTGCACCAAAAATTGGTTGACTTTCTGAGGTTTCTACAGAAG AATCAGAGTGCTTTTTTCCTCTCTACATATCATGTCCCAGAAGATTCTGAAGCAAACACCATCAAACAAGATCACTAG
AA sequence Show only first row Show all	>Potri.014G022400.3 pacid=42762259 polypeptide=Potri.014G022400.3.p locus=Potri.014G022400 ID=Potri.014G022400.3.v4.1 annot-version=v4.1 MGSSDTGLNNDDDSATVSDESNTETDSDMRTETDEECQSSHPPSVFVNDEKVLAFHSGQYYEAKVIRALYEENKWGFFVHYTGWNKTWDEWVGTDRLLKH TEENVQTQKALKERLEMEMKTKAVQAPQMKLKNSGVSRGRKRKNDNLNKEKDLVPLEKLVNLQIPPTLKKQLVDDCEFITHQSKLVKLPRAPNVQDICKK YCEYRSKKDVMMPESTAEIMKGLRCYFDKALPAMLLYKSERQQYTYAIRDDVSPSMVYGAEHLLRLFVKLPELLVHANIEEETLTELHQKLVDFLRFLQK NQSAFFLSTYHVPEDSEANTIKQDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02740			MRG family protein (.1)		Potri.014G022400 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Potri.004G073000 [exp]	7.54	0.8287
AT4G16480		ATINT4	inositol transporter 4 (.1)		Potri.006G015200 [exp]	10.67	0.8061
AT1G19690			NAD(P)-binding Rossmann-fold s...		Potri.002G031500 [exp]	15.39	0.7265
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.019G089000 [exp]	16.15	0.8122
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G105300 [exp]	19.44	0.8179
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Potri.011G138200 [exp]	22.89	0.8097
AT2G17650			AMP-dependent synthetase and l...		Potri.005G099500 [exp]	23.66	0.7921
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Potri.010G148100 [exp]	23.95	0.7796	Pt-GAL1.3
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Potri.007G023500 [exp]	26.72	0.7392
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Potri.004G161500 [exp]	28.84	0.7570

Compare expression of checked genes

Potri.014G022400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.