Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19480 860 / 0 D-3-phosphoglycerate dehydrogenase (.1) AT4G34200 855 / 0 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT1G17745 819 / 0 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT1G17744 181 / 3e-54 unknown protein AT1G72190 122 / 5e-30 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT5G14780 115 / 6e-28 FDH formate dehydrogenase (.1) AT1G68010 108 / 2e-25 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G79870 107 / 2e-25 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 105 / 7e-25 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 99 / 2e-22 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G122700 [exp] 1011 / 0 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.009G096600 [exp] 912 / 0 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.001G300900 [exp] 904 / 0 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.008G009500 [exp] 839 / 0 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.010G249600 [exp] 834 / 0 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.004G175800 [exp] 114 / 7e-27 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.014G161300 [exp] 112 / 1e-26 AT5G14780 581 / 0.0 formate dehydrogenase (.1) Potri.003G052700 [exp] 109 / 3e-26 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.013G104200 [exp] 107 / 5e-25 AT1G72190 466 / 1e-164 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014096 [exp] 917 / 0 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10019818 [exp] 917 / 0 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10027868 [exp] 915 / 0 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10035758 [exp] 442 / 9e-149 AT1G17745 727 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037333 [exp] 244 / 6e-78 AT1G17745 265 / 2e-86 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037552 [exp] 120 / 8e-30 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 115 / 4e-28 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 113 / 2e-27 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10032150 [exp] 112 / 1e-26 AT5G14780 618 / 0.0 formate dehydrogenase (.1) Lus10035866 [exp] 111 / 1e-26 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain CL0063 [poplar] [flax] NADP_Rossmann PF02826 [poplar] [flax] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G022800.1 pacid=42763305 polypeptide=Potri.014G022800.1.p locus=Potri.014G022800 ID=Potri.014G022800.1.v4.1 annot-version=v4.1 ATGGCGGCTACATCTTCTTGGAATTTCATGGTTACTCCAACAAAGCCTTCTCTCTCGTGGAAACTCTCTTTTTTCTCTCCTTTAACTACAGTCAACGTTA CCCGCCGCCAAAACAGGACGGCCAAAAGATTTGTCGTCTTTGCCACTGTATTTCTTGATCCCAAGCCCACGGTCCTCGTTGCCGAAAAACTCGGAGAAGC TGGTCTCGAGCTACTGAAAACATTTGCGAATGTTGATTGCTCTTACAACCTCGACCATGAGGAGTTATGTACTAAGATTTCACTTTGTGATGCGTTGATT GTGAGAAGTGGGACTAAGGTCACCCGCGAGGTTTTTGAAAGGTCAGGCGGCAGACTTAAGGTTGTGGGTCGGGCTGGTGTTGGTATTGATAATGTTGACT TGTCGGCTGCCACTGAACATGGGTGTTTGGTGGTTAATGCTCCCACGGCTAATACGATTGCAGCTGCTGAGCATGGGATTGCTTTACTTACTGCTATGGC TAGGAATATTGCTCAAGCTGATGCCTCTATTAAATCTGGAAAGTGGCAGAGAAGCAAATATGTTGGGGTTTCACTTGTGGGGAAGACACTTGCTGTCATG GGGTTTGGAAAGGTTGGTTCGGAAGTGGCACGGCGTGCCAAGGGTCTTGGCATGCATGTGATTGCACATGATCCTTATGCCCCAGCAGACCGTGCCCGTG CTATAGGTGTGGATTTGGTATCTTTCGAAGAAGCTATATCGACAGCAGATTTCATCTCCCTACATATGCCTCTTACCCCTGCTACATCAAAAATGTTCAA CGATGAGTCTTTTTCCCAGATGAAGAAAGGAGTCCGAATTGTCAATGTTGCTCGTGGTGGAGTAATCGACGAGGAAGCTCTAGTAAGAGCTCTGGATTCC GGGACTGTTGCTCAGGCAGCGCTTGATGTCTTTACAGAAGAGCCCCCTTCAAAAGACAGCAAGTTGGTGCTGCATGAAAATGTGACTGTGACTCCTCATC TCGGTGCTAGCACTACAGAGGCTCAGGAAGGTGTAGCCATTGAAGTAGCAGAAGCTGTTGTTGGAGCTTTAAAAGGGCAGCTTGCTGCGACTGCTGTAAA TGCACCAATGCTTCCTGCCGAGATCCTGTCAGAACTTGCACCATTTGTTACTCTGTCAGAAAAGCTTGGCAGACTGGCAGTCCAACTGGTTGCTGGTGGA AGGGGGGTGCAATCAGTTAAGGTGACTTATGCTTCTGCCAGAGGTCCAGATGATCTTGACACTCGGCTGCTTCGTGCGATGATTACCAAGGGTCTGATTG AGCCTATCTCCAGTGTTTTTATAAACTTAGTGAATGCTGACTTCTCTGCTAAGCAGAGAGGACTTAGGATAACAGAAGAGCGCATTCTGCTGGATGGTTC ACCAGAAAATCCACTTGAGTTCATCCAGGTTCAAATTGCCAATGTAGAATCCAAATTTTCCATAGCAATGTCCGACTCTGGTGAGATTAAAGTAGAGGGA AGAGTGAAAGATGGGAAGCCCCACCTTACAATGGTAGGTTCATTTGGTGTTGATGTGAGCATGGAAGGCAGCCTCATACTGTGCAGACAGGTTGATCAAC CAGGTATGGTTGGCAGTGTGGGGAGTATCCTTGGTGAGGAGAATGTAAATGTGAGTTTCATGAGTGTTGGTAGGATCGCTCCACGAAAACAGGCTGTAAT GACCATTGGTGTGGACGAGGAACCCAGCAAGGAGGCGTTAAAGAGGATCAGGGAAATACCAGCAGTTGAAGAAATTGTGTTTCTTAAGTTGTAG
AA sequence Show only first row Show all	>Potri.014G022800.1 pacid=42763305 polypeptide=Potri.014G022800.1.p locus=Potri.014G022800 ID=Potri.014G022800.1.v4.1 annot-version=v4.1 MAATSSWNFMVTPTKPSLSWKLSFFSPLTTVNVTRRQNRTAKRFVVFATVFLDPKPTVLVAEKLGEAGLELLKTFANVDCSYNLDHEELCTKISLCDALI VRSGTKVTREVFERSGGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASIKSGKWQRSKYVGVSLVGKTLAVM GFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFEEAISTADFISLHMPLTPATSKMFNDESFSQMKKGVRIVNVARGGVIDEEALVRALDS GTVAQAALDVFTEEPPSKDSKLVLHENVTVTPHLGASTTEAQEGVAIEVAEAVVGALKGQLAATAVNAPMLPAEILSELAPFVTLSEKLGRLAVQLVAGG RGVQSVKVTYASARGPDDLDTRLLRAMITKGLIEPISSVFINLVNADFSAKQRGLRITEERILLDGSPENPLEFIQVQIANVESKFSIAMSDSGEIKVEG RVKDGKPHLTMVGSFGVDVSMEGSLILCRQVDQPGMVGSVGSILGEENVNVSFMSVGRIAPRKQAVMTIGVDEEPSKEALKRIREIPAVEEIVFLKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19480			D-3-phosphoglycerate dehydroge...		Potri.014G022800 [exp]	0	1
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Potri.002G127400 [exp]	1.00	0.8281
AT5G47580		ASG7	ALTERED SEED GERMINATION 7, un...		Potri.003G110700 [exp]	3.46	0.8123
AT3G16510			Calcium-dependent lipid-bindin...		Potri.010G024200 [exp]	5.29	0.7837	SRC2.1
AT4G15093			catalytic LigB subunit of arom...		Potri.018G136800 [exp]	9.79	0.8005
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.001G416600 [exp]	10.24	0.7773
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.008G041800 [exp]	11.83	0.7679
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G024600 [exp]	11.83	0.8180
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.001G369100 [exp]	13.96	0.8012	ATCSLE1.1
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.003G004200 [exp]	14.59	0.8163
AT3G02100			UDP-Glycosyltransferase superf...		Potri.013G022800 [exp]	17.49	0.7966

Compare expression of checked genes

Potri.014G022800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.