Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16150 556 / 0 ASPGB1 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) AT5G08100 370 / 8e-129 ASPGA1 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT4G00590 93 / 7e-21 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT5G61540 85 / 2e-18 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G122900 [exp] 598 / 0 AT3G16150 540 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.012G063400 [exp] 356 / 4e-123 AT5G08100 485 / 2e-174 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.014G080600 [exp] 90 / 7e-20 AT4G00590 486 / 1e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.014G191900 [exp] 70 / 3e-13 AT5G61540 497 / 2e-177 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024795 [exp] 558 / 0 AT3G16150 536 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Lus10034655 [exp] 362 / 3e-125 AT5G08100 507 / 0.0 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10034668 [exp] 354 / 2e-122 AT5G08100 489 / 6e-176 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10017879 [exp] 115 / 4e-31 AT5G08100 157 / 4e-48 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10040935 [exp] 105 / 2e-25 AT4G00590 484 / 8e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10009826 [exp] 91 / 2e-20 AT4G00590 446 / 2e-156 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10020385 [exp] 74 / 2e-14 AT5G61540 429 / 1e-147 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10009560 [exp] 69 / 1e-12 AT5G61540 518 / 0.0 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [poplar] [flax] NTN PF01112 [poplar] [flax] Asparaginase_2 Asparaginase
Representative CDS sequence Show only first row Show all	>Potri.014G022900.1 pacid=42762947 polypeptide=Potri.014G022900.1.p locus=Potri.014G022900 ID=Potri.014G022900.1.v4.1 annot-version=v4.1 ATGGGAGGATGGGCTATAGCGGTGCATGGAGGCGCTGGTGTGGACCCAAATCTCCCACGAGAGAGACAAGAGGAGGCCAAAAAACTCCTCACTCGCTGCC TTCAGATCGGCATCTCTGCTCTTCGCTCTAATCTCCCCGCGATTGATGTTGTCGAACTTGTTGTGAGAGAATTGGAAACGGATCCCTTGTTCAATTCTGG CCGTGGATCTGCCCTAACAGAGAATGGAACAGTGGAAATGGAAGCCAGCATAATGGATGGTCCTAAGAGAAGATGTGGTGCCGTATCAGGTTTAACCACA GTTAAAAACCCAGTCTCTCTTGCAAGACTTGTCATGGAGAAATCTCCCCATTCATATCTTGCTTTTTCTGGCGCCGAGGAATTTGCTAGGCAACAGGGTG TTGAGCTGGTGGACAATGACTATTTTATAACAGAGGAAAACGTCGGGATGTTGAAATTAGCAAAAGAAGCCAACTCCATCTTGTTTGATTACAGAATCCC AGCCGCTGGATTGGAAAGTTGCAGCGTGGGTGCCGCTGCTAACAGTCCCTTGGTAATGAACGGACTCCCAATCAGCGTTTATGCGCCCGAAACAGTTGGG TGTGTGGCTGTGGACAGGGAAGGAAGGTGCGCTGCCGCCACTTCAACAGGTGGGCTCATGAACAAAAAAACAGGTCGTATTGGTGACTCACCCTTGATTG GTTCTGGGACCTACGCTGGTGATCTTTGTGGGATCTCATGCACTGGAGAAGGAGAGGCCATTATACGAGGGACACTAGCACGTGATGTGGCGGCAGTGAT GGAGTACAAGGGATTAGGCCTGCAAGAAGCTGTGGATTTTGTTGTGAAGGAGAGGCTTGATGAAGGGCGAGCTGGGTTGATAGCAGTGTCTAGAGACGGG GAAGTGGCATGTGGTTTCAACACCAATGGGATGTTTAGGGGATTTGCCACTGAAGATGGGTTCATGGAAGTCGGTATTTGGGAATAA
AA sequence Show only first row Show all	>Potri.014G022900.1 pacid=42762947 polypeptide=Potri.014G022900.1.p locus=Potri.014G022900 ID=Potri.014G022900.1.v4.1 annot-version=v4.1 MGGWAIAVHGGAGVDPNLPRERQEEAKKLLTRCLQIGISALRSNLPAIDVVELVVRELETDPLFNSGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTT VKNPVSLARLVMEKSPHSYLAFSGAEEFARQQGVELVDNDYFITEENVGMLKLAKEANSILFDYRIPAAGLESCSVGAAANSPLVMNGLPISVYAPETVG CVAVDREGRCAAATSTGGLMNKKTGRIGDSPLIGSGTYAGDLCGISCTGEGEAIIRGTLARDVAAVMEYKGLGLQEAVDFVVKERLDEGRAGLIAVSRDG EVACGFNTNGMFRGFATEDGFMEVGIWE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Potri.014G022900 [exp]	0	1
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.009G010350 [exp]	5.47	0.9115
					Potri.001G131600 [exp]	11.48	0.9220
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026700 [exp]	12.56	0.9188	PtrProT5
					Potri.008G212400 [exp]	23.06	0.9091
AT2G45040			Matrixin family protein (.1)		Potri.001G157500 [exp]	23.08	0.9055	Pt-MMP.15
AT5G42830			HXXXD-type acyl-transferase fa...		Potri.014G025500 [exp]	26.15	0.9058
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004500 [exp]	28.98	0.9009
AT2G32210			unknown protein		Potri.001G439800 [exp]	33.46	0.9071
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.005G219300 [exp]	34.04	0.8839
AT1G51920			unknown protein		Potri.003G061000 [exp]	42.28	0.9094

Compare expression of checked genes

Potri.014G022900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.