Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46630 218 / 1e-72 Protein of unknown function (DUF3223) (.1) AT1G45230 118 / 3e-33 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) AT2G40030 116 / 3e-30 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT1G63020 68 / 3e-13 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) AT5G62440 45 / 5e-06 Protein of unknown function (DUF3223) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G023200 [exp] 277 / 6e-96 AT3G46630 194 / 6e-63 Protein of unknown function (DUF3223) (.1) Potri.002G125700 [exp] 129 / 1e-37 AT1G45230 210 / 6e-69 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G028300 [exp] 122 / 8e-35 AT1G45230 221 / 2e-73 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.003G196900 [exp] 107 / 6e-27 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G027232 [exp] 105 / 2e-26 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G111300 [exp] 71 / 3e-14 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.005G033100 [exp] 50 / 2e-07 AT5G62440 181 / 2e-57 Protein of unknown function (DUF3223) (.1) Potri.013G022500 [exp] 39 / 0.0007 AT5G62440 148 / 7e-45 Protein of unknown function (DUF3223) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018738 [exp] 214 / 4e-71 AT3G46630 201 / 1e-65 Protein of unknown function (DUF3223) (.1) Lus10024797 [exp] 203 / 1e-66 AT3G46630 201 / 9e-66 Protein of unknown function (DUF3223) (.1) Lus10009756 [exp] 124 / 4e-35 AT1G45230 193 / 3e-62 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Lus10006488 [exp] 123 / 5e-35 AT1G45230 195 / 8e-63 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Lus10002748 [exp] 106 / 2e-26 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10016332 [exp] 100 / 1e-24 AT2G40030 1086 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10002955 [exp] 61 / 5e-11 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10006339 [exp] 61 / 7e-11 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10021669 [exp] 49 / 3e-07 AT5G62440 180 / 1e-57 Protein of unknown function (DUF3223) (.1) Lus10035009 [exp] 49 / 5e-07 AT5G62440 179 / 5e-57 Protein of unknown function (DUF3223) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11523 [poplar] [flax] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Potri.014G023400.1 pacid=42763881 polypeptide=Potri.014G023400.1.p locus=Potri.014G023400 ID=Potri.014G023400.1.v4.1 annot-version=v4.1 ATGGCTGCATCTGCACTTATCAGGGGCGCCCCGCTTCTGCGCCTCCGGCTTCAACACCACCATCGCTTCGCCACCGTATTACTCGTGCCACTTCGGAGAT CATGGTGTTCTACAGCGGAGTCTACTCCACTGGAAGAGGATGGTGTACCTCTTTCGACTCCCGCAGCGTTGAGCTTGCGCAAGGCACCAAAGAATTCAAG TTGGGACGACCAAAATTACCGACAGTGGAAAGATGAAGAAGCAGATATTTGGAGAGATATTGAACCTATAACTCACCTCGCTAAAGAAATTATCCACTCT GACAGATACATGGACGGAGAACAACTAACAGATGAAGATGAGAAAGTTGTGGCAGAGAGGCTTCTTGCTTATCATCCGAATTCTGATGATAAAATAGGAT GTGGGCTTGATTCTATAATGGTTGACCGTCATCCCTTATTTAAAAACTCCAGGTGCCTGTTTGTTGTAAGAATTGATGGTGGATGGATAGACTTCTCCTA TCAGAAGTGCCTTCGAGCATACATTCGATCCAAGTACCCAACTCATGCAGAAAGATTCATTAAAGAACATTTTAAACGTGGCAGTTGA
AA sequence Show only first row Show all	>Potri.014G023400.1 pacid=42763881 polypeptide=Potri.014G023400.1.p locus=Potri.014G023400 ID=Potri.014G023400.1.v4.1 annot-version=v4.1 MAASALIRGAPLLRLRLQHHHRFATVLLVPLRRSWCSTAESTPLEEDGVPLSTPAALSLRKAPKNSSWDDQNYRQWKDEEADIWRDIEPITHLAKEIIHS DRYMDGEQLTDEDEKVVAERLLAYHPNSDDKIGCGLDSIMVDRHPLFKNSRCLFVVRIDGGWIDFSYQKCLRAYIRSKYPTHAERFIKEHFKRGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46630			Protein of unknown function (D...		Potri.014G023400 [exp]	0	1
AT3G15580		APG8H, ATG8I	AUTOPHAGY 8I, AUTOPHAGY 8H, Ub...		Potri.002G189450 [exp]	2.64	0.9601
AT5G43060			Granulin repeat cysteine prote...		Potri.007G047600 [exp]	3.16	0.9629
AT4G25370			Double Clp-N motif protein (.1...		Potri.015G131700 [exp]	3.74	0.9577
AT1G52870			Peroxisomal membrane 22 kDa (M...		Potri.011G123700 [exp]	4.89	0.9679
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.001G049300 [exp]	7.07	0.9588
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Potri.004G016900 [exp]	7.74	0.9636	Pt-LAF6.1
AT2G44870			unknown protein		Potri.004G030100 [exp]	9.16	0.9674
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Potri.017G073000 [exp]	9.69	0.9500
AT2G34460			NAD(P)-binding Rossmann-fold s...		Potri.011G079600 [exp]	9.74	0.9558
AT2G22360			DNAJ heat shock family protein...		Potri.007G094900 [exp]	10.00	0.9549

Compare expression of checked genes

Potri.014G023400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.