Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47056 636 / 0 VFB1 VIER F-box proteine 1 (.1) AT4G07400 612 / 0 VFB3 VIER F-box proteine 3 (.1) AT5G67250 546 / 0 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT3G50080 515 / 2e-179 VFB2 VIER F-box proteine 2 (.1) AT4G15475 115 / 7e-27 F-box/RNI-like superfamily protein (.1) AT5G23340 84 / 5e-17 RNI-like superfamily protein (.1) AT2G25490 83 / 1e-16 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G27920 79 / 3e-15 F-box family protein (.1) AT5G25350 78 / 7e-15 EBF2 EIN3-binding F box protein 2 (.1) AT3G26810 76 / 3e-14 AFB2 auxin signaling F-box 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G123100 [exp] 889 / 0 AT1G47056 649 / 0.0 VIER F-box proteine 1 (.1) Potri.007G048101 [exp] 561 / 0 AT5G67250 581 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.005G141800 [exp] 545 / 0 AT5G67250 570 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.006G081600 [exp] 333 / 1e-107 AT4G07400 286 / 3e-89 VIER F-box proteine 3 (.1) Potri.006G254100 [exp] 91 / 6e-19 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.017G056400 [exp] 83 / 5e-17 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.018G027700 [exp] 84 / 8e-17 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.017G061600 [exp] 83 / 1e-16 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.001G323100 [exp] 81 / 5e-16 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018737 [exp] 775 / 0 AT1G47056 638 / 0.0 VIER F-box proteine 1 (.1) Lus10011506 [exp] 530 / 0 AT5G67250 566 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10019319 [exp] 471 / 7e-163 AT5G67250 505 / 3e-176 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10024798 [exp] 213 / 2e-66 AT1G47056 179 / 4e-54 VIER F-box proteine 1 (.1) Lus10024799 [exp] 116 / 1e-30 AT4G07400 93 / 3e-23 VIER F-box proteine 3 (.1) Lus10012764 [exp] 119 / 9e-28 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 101 / 4e-22 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10002014 [exp] 85 / 5e-17 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 83 / 2e-16 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10001264 [exp] 82 / 3e-16 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.014G023500.1 pacid=42762347 polypeptide=Potri.014G023500.1.p locus=Potri.014G023500 ID=Potri.014G023500.1.v4.1 annot-version=v4.1 ATGGGTCAGTCAGCTTCGACGGCTTTAATCACAAGCCGTCGAGATTCAAATCGCAGCAGCAGCCACCGGTCAAAATCTAAATTCACGGTCCCGATCATGC CGATGCAAGTAGAAGAACAAACTGAATTTATATTCTGCGAAGGACCTGATTACATCTCAGATCTTCCTGATGAATGCTTAGCTTGTATTTTCCAGTCACT CAATTCCGGCGACCGGAAACACTGCTCTTTAGTCTGTCGGCGATGGTTAAGAATCGAAGGACAGAGCCGTCACCGACTCTCTCTCAACGCCCAATCAGAT CTTCTCCCTTTAGTACCGTTTCTCTTTTCTCGCTTCGACTCTGTAACTAAACTTGCTCTAAAATGTGACCGCAGATCTACTAGCATCGGCGACGAAGCGT TAGTTGCAATATCCAGTCGTTGCCGTAACCTCACGCGCCTCAAGCTCCGCTCGTGTAGAGAACTCACCGACGCAGGCATGGCAGCTTTCGCTAAAAATTG TAAAGCATTGAAGAAGCTATCGTGTGGATCTTGCACTTTTGGAGCGAGAGGGATGAATGCCATCCTTGATAATTGCGCGTCGCTCGAGGAGCTATCGCTA AAACGGCTTCGAGGAATTACCGATGGCGCGGCGGCTGAGCCCGTAGGACCGGGTTTAGCTGCGGCTTCACTTAAAACTATTTGCTTAAAGGAACTTTATA ATGGACAGTGTTTTGGCCCGCTTATAATCGGGTCAAAGAATTTAAAAACTCTGAAGCTTTTTAGATGCTCTGGCGATTGGGATAAGCTTCTTCAAGTAAT TTCGGATCGGGTAACGGGTATGGTTGAGATCCATTTAGAGAGGCTCCAAGTTAGCGATACTGGCCTTGCGGCCATCTCTAATTGTTTGAATTTAGAGATT TTGCATCTAGTTAAAACCCCAGAGTGTACTGATACGGGACTTGTTTCCATCGCGGAGCGTTGTAGGTTATTAAGAAAGCTTCATGTTGATGGTTGGAAGA CGAATCGGATTGGTGATGATGGGTTATCGGCAGTTGCTAAGTACTGTCCCAATTTGCAAGAGTTGGTGCTCATTGGTGTGAATCCTACAAAAATTAGTGT AGAATTGTTAGCTTCAAATTGTCAGAATCTAGAGCGGTTAGCATTATGTGGGAGTGATACTGTTGGTGATGCGGAGATTTCTTGTATTGCAGCCAAATGT GTAGCATTGAAAAAGCTTTGTATTAAGAGTTGTCCTGTTTCAGATCATGGGATGGAAGCGCTTGCAAATGGGTGCCCGAATTTGGTTAAAGTGAAGGTGA AGAAGTGTAGAGCAGTTACTTGTGAGTGTGCGGATTGGTTGAGAACGAAGAGGGGATCTTTGGCAGTGAATTTGGATTGTGGGGAACCTGAGCATCAGGA TGCAAGTGCTAGTGATGGTGGGTTACTGGAAAATGTAGTTGAGTTTCATTCAGTTGCTAATCAAATGCCGCTGCCTAGTATTGCATCTAGCAGTACTGGA CGATCAACTTCTTTCAAGTCAAGATTAGGGCTTTTGAGTGGGAAAAATTTGGTGGCTTGCACTTTTAGAAGATGGTCAGGTGGTAATAGCAGTTCTCGAG GATAA
AA sequence Show only first row Show all	>Potri.014G023500.1 pacid=42762347 polypeptide=Potri.014G023500.1.p locus=Potri.014G023500 ID=Potri.014G023500.1.v4.1 annot-version=v4.1 MGQSASTALITSRRDSNRSSSHRSKSKFTVPIMPMQVEEQTEFIFCEGPDYISDLPDECLACIFQSLNSGDRKHCSLVCRRWLRIEGQSRHRLSLNAQSD LLPLVPFLFSRFDSVTKLALKCDRRSTSIGDEALVAISSRCRNLTRLKLRSCRELTDAGMAAFAKNCKALKKLSCGSCTFGARGMNAILDNCASLEELSL KRLRGITDGAAAEPVGPGLAAASLKTICLKELYNGQCFGPLIIGSKNLKTLKLFRCSGDWDKLLQVISDRVTGMVEIHLERLQVSDTGLAAISNCLNLEI LHLVKTPECTDTGLVSIAERCRLLRKLHVDGWKTNRIGDDGLSAVAKYCPNLQELVLIGVNPTKISVELLASNCQNLERLALCGSDTVGDAEISCIAAKC VALKKLCIKSCPVSDHGMEALANGCPNLVKVKVKKCRAVTCECADWLRTKRGSLAVNLDCGEPEHQDASASDGGLLENVVEFHSVANQMPLPSIASSSTG RSTSFKSRLGLLSGKNLVACTFRRWSGGNSSSRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Potri.014G023500 [exp]	0	1
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.008G112200 [exp]	3.00	0.7004
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.011G167532 [exp]	5.65	0.6792
AT2G21180			unknown protein		Potri.004G167700 [exp]	16.52	0.6724
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Potri.015G141400 [exp]	16.79	0.6637
AT3G05320			O-fucosyltransferase family pr...		Potri.015G117500 [exp]	16.94	0.5881
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120400 [exp]	16.97	0.6194
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Potri.019G018100 [exp]	16.97	0.6479	PPCK2.2
AT2G41690	HSF	AT-HSFB3, HSFB3	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.006G049200 [exp]	17.29	0.6393	Pt-HSFB3.1
AT1G47740			PPPDE putative thiol peptidase...		Potri.002G134200 [exp]	17.43	0.6136
AT2G43250			unknown protein		Potri.017G035700 [exp]	23.91	0.5803

Compare expression of checked genes

Potri.014G023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.