Plant FIBer expression Database

Potri.014G023800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G07390 337 / 1e-118 Mannose-P-dolichol utilization defect 1 protein (.1)
AT5G59470 326 / 5e-114 Mannose-P-dolichol utilization defect 1 protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021350
[exp]
366 / 9e-130 AT4G07390 369 / 3e-131 Mannose-P-dolichol utilization defect 1 protein (.1)
Lus10017025
[exp]
366 / 9e-130 AT4G07390 369 / 3e-131 Mannose-P-dolichol utilization defect 1 protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0141 MtN3-like PF04193 PQ-loop PQ loop repeat
Representative CDS sequence
>Potri.014G023800.1 pacid=42764668 polypeptide=Potri.014G023800.1.p locus=Potri.014G023800 ID=Potri.014G023800.1.v4.1 annot-version=v4.1
ATGAAGGTTTTAGGGATGGATTTCGGCTGCGCAACCGGATCTCTCCGCGACGGTAAATTCCCCGATAAAGACTGTTTGCTTCCACTAATCTCCAAGCTTC
TCGGTTACGCCATCGTTGCCGCCTCCACCACCGTCAAAGTCCCCCAGATACTGAAAATTTTGAAGAATAAAAGCGTGAGAGGGCTTAGTGTTGTAGGGTT
TGAGCTTGAAGTGGTTGGTTATACCATAGCCCTAGCTTACTGTCTTCACAAAGGCCTTCCTTTTTCTGCTTATGGAGAATTGGCTTTTCTTTTGATCCAA
GCTATAATTTTAGTTGCTATTATCTACTACTTCTCACAACCTGTGCGAACGACTACATGGATCAGGGCATTGCTTTATTGTGCTCTAGCACCAACTGTTT
TAGCCGGTCAAATTGAGCCGTTTCTTTTTGAAGCTCTCTATGCGTCCCAACATGCGATTTTTCTCTTTGCCAGGATTCCACAGATATGGGAGAACTTTTC
TAACAAAAGCACAGGGGAGCTCAGCTTCTTAACATGCTTCATGAATTTTGGTGGTGGTTTGGTGAGAGTTTTTACCAGCATGCAAGAGAAGGCACCAACA
AGTGTTGTTTTGGGCTCCCTACTTGGTATGATCACAAATGGTACCATCCTCAGTCAGATAATTTTCTACCGAAAGCCTGAAACCAAGAAAGAGAAAAAAA
TAAACTAA
AA sequence
>Potri.014G023800.1 pacid=42764668 polypeptide=Potri.014G023800.1.p locus=Potri.014G023800 ID=Potri.014G023800.1.v4.1 annot-version=v4.1
MKVLGMDFGCATGSLRDGKFPDKDCLLPLISKLLGYAIVAASTTVKVPQILKILKNKSVRGLSVVGFELEVVGYTIALAYCLHKGLPFSAYGELAFLLIQ
AIILVAIIYYFSQPVRTTTWIRALLYCALAPTVLAGQIEPFLFEALYASQHAIFLFARIPQIWENFSNKSTGELSFLTCFMNFGGGLVRVFTSMQEKAPT
SVVLGSLLGMITNGTILSQIIFYRKPETKKEKKIN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G07390 Mannose-P-dolichol utilization... Potri.014G023800
[exp]
0 1
AT5G50850 MAB1 MACCI-BOU, Transketolase famil... Potri.001G061400
[exp]
3.74 0.9018
AT2G05840 PAA2 20S proteasome subunit PAA2 (.... Potri.006G110800
[exp]
7.48 0.8345 PAA1.3
AT5G13450 ATP5 delta subunit of Mt ATP syntha... Potri.009G061600
[exp]
16.18 0.8546
AT2G20360 NAD(P)-binding Rossmann-fold s... Potri.002G255900
[exp]
22.58 0.8468
AT3G12260 LYR family of Fe/S cluster bio... Potri.001G029900
[exp]
23.45 0.8396
AT3G52300 ATPQ "ATP synthase D chain, mitocho... Potri.010G217800
[exp]
26.45 0.8531
AT1G52600 Peptidase S24/S26A/S26B/S26C f... Potri.001G171200
[exp]
26.60 0.8542
AT5G67500 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE D... Potri.005G146800
[exp]
30.96 0.8463
AT1G27530 unknown protein Potri.002G107600
[exp]
39.19 0.8172
AT4G12590 Protein of unknown function DU... Potri.006G011500
[exp]
39.49 0.8226

Potri.014G023800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.