Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60060 244 / 2e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT5G53900 137 / 1e-36 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 134 / 9e-36 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G06150 92 / 7e-20 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G31280 83 / 4e-17 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT2G27230 67 / 6e-12 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT1G64625 52 / 4e-07 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT5G24352 46 / 2e-06 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT2G46510 42 / 0.0005 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096400 [exp] 247 / 5e-79 AT1G60060 459 / 4e-162 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.011G116400 [exp] 137 / 2e-36 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.001G397800 [exp] 137 / 3e-36 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.005G222500 [exp] 90 / 3e-19 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 83 / 6e-17 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.006G090000 [exp] 76 / 1e-14 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G144900 [exp] 68 / 4e-12 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G216900 [exp] 67 / 1e-11 AT2G27230 363 / 3e-113 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G086000 [exp] 66 / 2e-11 AT2G27230 248 / 7e-72 LONESOME HIGHWAY, transcription factor-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024800 [exp] 370 / 7e-128 AT1G60060 221 / 8e-70 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10018736 [exp] 364 / 1e-125 AT1G60060 220 / 4e-69 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10012986 [exp] 251 / 2e-80 AT1G60060 428 / 8e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10029179 [exp] 251 / 3e-80 AT1G60060 429 / 6e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10041936 [exp] 135 / 1e-35 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10005549 [exp] 119 / 7e-30 AT5G53900 410 / 7e-142 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10033880 [exp] 77 / 4e-15 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10000609 [exp] 57 / 2e-08 AT2G31280 483 / 2e-161 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10013348 [exp] 54 / 1e-07 AT2G27230 355 / 6e-112 LONESOME HIGHWAY, transcription factor-related (.1.2) Lus10001527 [exp] 53 / 2e-07 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [poplar] [flax] GAF PF14215 [poplar] [flax] bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal
Representative CDS sequence Show only first row Show all	>Potri.014G024000.4 pacid=42762523 polypeptide=Potri.014G024000.4.p locus=Potri.014G024000 ID=Potri.014G024000.4.v4.1 annot-version=v4.1 ATGGAAGGTGGACTCCCGATGCTTAACTGTCTCTTACAGCACACGCTGAGGAGCCTGTGTTCATGTACAGATTCTTCTAATCCTTCCAAATGGGTGTATG CAGTCTTTTGGAGGATACTGCCTAGGAATTACCCTCCACCAAAGTGGGATTATGGAGGCACTGCTCTTGATCGTTCCAAAGGAAACAAAAGAAACTGGAT CCTAGTTTGGGAGGATGGATTTTGCGATGTCTATGAATGTGAGAGGGCAGGAACTGGGTACATGAAGGGAAGATTTGGAACAGATGTCTTCTTCAAAATG TCTCATGAAGTTTATAACTACGGGGAAGGATTAGTGGGGAAAGTTGCAGCAGATAACAGTCACAAATGGGTGTTCAAAGAAAACCCAAATGAGAGTGATC CGAACTTAATCTCCTCATGGAATATGTCAATTGAACCTCAGCCAAGAGCATGGGAATTTCAATTCAATTCAGGCATTCAGACAATTGCCATCATTTCAGT CAGGGAAGGTGTCATTCAATTGGGTTCTTTTGATAAGATTGTGGAAGACCTTAATTTGGTAATCAGTATACAGAGGAAATTCAGCTATCTCCAGAGCATA CCAGGAATCTTTGCAATACAAAGACCATACCTGCCAATTCAGCATCCATACATTACCAAACCCAACACCCATACGATCGAAAACCAAGAAATAGCCTTCT CAGTTGATGACAAACGCCAAATAACAGGAGTTAAGAGATTGTTTCATGAAAGTTTAGATGATTTTCCAATAAAGGCAATCAACATGGGCTGGAACAGTCC CCAAAATGGAATCCCAGGACCCCCCATTTGGTCAATACCACCTCTTCTGCCCACCATGTCTTGCAGTCTCGGAGCTTTGTTATCAAAGTTACCTTCTGCG ACCCCTTCCTATAGTAACATAGAAGCTCTTGGCACATCTCTTCTTAACAACAACAACAATAATCGTACTAGTATAAGCCAGAGAGTCAGGGTTGATGATC TTGGAGTAACAAGAGAAGGCCAGCTAGTCTCCTCTGGCCATTTAGATGCTGCTCGAGAAGAAAAACCAACTTCCATAAAGCCTAGTTTAAACTTACCGGA CAAGGTGGTCGGTTTTGGACATGTCAGAGAGGGAGAAAGTGCCTTGAGTCTCAACTGA
AA sequence Show only first row Show all	>Potri.014G024000.4 pacid=42762523 polypeptide=Potri.014G024000.4.p locus=Potri.014G024000 ID=Potri.014G024000.4.v4.1 annot-version=v4.1 MEGGLPMLNCLLQHTLRSLCSCTDSSNPSKWVYAVFWRILPRNYPPPKWDYGGTALDRSKGNKRNWILVWEDGFCDVYECERAGTGYMKGRFGTDVFFKM SHEVYNYGEGLVGKVAADNSHKWVFKENPNESDPNLISSWNMSIEPQPRAWEFQFNSGIQTIAIISVREGVIQLGSFDKIVEDLNLVISIQRKFSYLQSI PGIFAIQRPYLPIQHPYITKPNTHTIENQEIAFSVDDKRQITGVKRLFHESLDDFPIKAINMGWNSPQNGIPGPPIWSIPPLLPTMSCSLGALLSKLPSA TPSYSNIEALGTSLLNNNNNNRTSISQRVRVDDLGVTREGQLVSSGHLDAAREEKPTSIKPSLNLPDKVVGFGHVREGESALSLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60060			Serine/threonine-protein kinas...		Potri.014G024000 [exp]	0	1
AT3G52500			Eukaryotic aspartyl protease f...		Potri.009G162400 [exp]	12.44	0.9400
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G093900 [exp]	17.20	0.9391
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G151200 [exp]	21.97	0.9383	SP1.2
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Potri.019G024400 [exp]	22.71	0.9375
					Potri.006G028000 [exp]	29.32	0.9347
					Potri.006G027800 [exp]	38.49	0.9344
					Potri.006G028601 [exp]	42.08	0.9342
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Potri.001G259100 [exp]	44.89	0.9336
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Potri.017G086300 [exp]	53.27	0.9323
AT4G27290			S-locus lectin protein kinase ...		Potri.001G414000 [exp]	56.39	0.9315

Compare expression of checked genes

Potri.014G024000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.