Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RD21.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43060 646 / 0 Granulin repeat cysteine protease family protein (.1) AT1G47128 642 / 0 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT3G19390 536 / 0 Granulin repeat cysteine protease family protein (.1) AT4G36880 431 / 1e-149 CP1 cysteine proteinase1 (.1) AT1G09850 413 / 9e-142 XBCP3 xylem bark cysteine peptidase 3 (.1) AT3G19400 409 / 2e-141 Cysteine proteinases superfamily protein (.1.2) AT4G35350 393 / 4e-135 XCP1 xylem cysteine peptidase 1 (.1.2) AT4G23520 393 / 4e-135 Cysteine proteinases superfamily protein (.1) AT3G48340 382 / 1e-130 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT1G20850 375 / 4e-128 XCP2 xylem cysteine peptidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302100 [exp] 594 / 0 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 593 / 0 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.007G047600 [exp] 473 / 4e-166 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.005G141600 [exp] 456 / 1e-159 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1) Potri.005G232900 [exp] 397 / 1e-135 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.004G207600 [exp] 394 / 2e-135 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.005G256000 [exp] 377 / 7e-129 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.002G005700 [exp] 377 / 1e-128 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1) Potri.011G066800 [exp] 372 / 7e-125 AT1G09850 359 / 7e-120 xylem bark cysteine peptidase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024801 [exp] 663 / 0 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10014087 [exp] 589 / 0 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10002827 [exp] 576 / 0 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 569 / 0 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10018735 [exp] 523 / 0 AT1G47128 491 / 3e-172 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10019827 [exp] 476 / 2e-167 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10006130 [exp] 398 / 1e-135 AT1G09850 535 / 0.0 xylem bark cysteine peptidase 3 (.1) Lus10013204 [exp] 359 / 1e-121 AT1G20850 509 / 0.0 xylem cysteine peptidase 2 (.1) Lus10030722 [exp] 359 / 1e-121 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2) Lus10013674 [exp] 359 / 2e-121 AT5G50260 554 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF00396 [poplar] [flax] Granulin Granulin CL0125 [poplar] [flax] PF08246 [poplar] [flax] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Potri.014G024100.1 pacid=42763040 polypeptide=Potri.014G024100.1.p locus=Potri.014G024100 ID=Potri.014G024100.1.v4.1 annot-version=v4.1 ATGGGGTTGTTTAGATCATCAACGCTCATGTTGATGCTATTGTTTCTAGTCTTTGCTTTATCATCAGCCTTCGACATGTCAATCATATCCTATCACCAAA CTCATGCTACCAAATCAAGCTGGAGAACTGATGATGAGGTTATGGCCATGTACGAGGAGTGGCTTGTAAAGCATGGAAAGAACTACAACGCTCTAGGAGA GAAAGAAAAGAGATTTGAGATTTTTAAGGATAATCTTATGTTTATTGATCAGCATAATTCAGAGAACCGGACCTACACAGTCGGGTTGAACCGATTTGCT GATCTGACCAACGAGGAGTTCCGGTCCATGTACTTGGGTACTCGAACTGGTCATAAGAAGAGGTTGCCTAAGACAAGTGATCGTTATGCTCCGCGTGTTG GAGACTCTTTGCCGGATTCCGTTGACTGGAGGAAGGAAGGTGCCGTAGCTGAGGTCAAAGATCAGGGAGGCTGTGGGAGTTGCTGGGCGTTCTCAACGAT TGCTGCTGTGGAAGGGATTAACAAGATCGTCACTGGTGATTTGATCGCTTTGTCTGAGCAGGAGTTGGTGGATTGTGATACCAGTTATAATGAAGGGTGC AATGGTGGTCTTATGGATTACGCTTTTGAATTCATCATCAACAATGGTGGCATTGACACTGAAGATGACTATCCCTACCTTGGTCGTGATGGTAGATGTG ACACGTACAGGAAAAATGCCAAAGTTGTTTCAATCGATTCTTATGAAGATGTTCCTGAAAATGATGAGACGGCATTGAAAAAGGCAGTGGCAAATCAGCC AGTGAGTGTTGCAATTGAAGGTGGTGGCAGAAATTTCCAGTTATATAATTCGGGTGTATTTACTGGAGAATGTGGGACAAGTCTGGACCATGGTGTTGCT GCCGTGGGTTACGGAACTGAAAAGGGTAAAGATTACTGGATTGTGAGGAACTCATGGGGCAAGAGCTGGGGAGAGAGCGGCTATATCAGAATGGAGAGAA ACATTGCTAGTCCAACAGGAAAATGTGGAATTGCAATAGAACCCTCTTACCCTATCAAGAAAGGCCAAAATCCCCCCAATCCTGGTCCATCGCCTCCATC TCCAGTAAAACCTCCTTCCGTGTGTGATAATTACTTTTCCTGCCCTGATAGCAGTACTTGCTGCTGCATCTTTGAGTATGGAAAGTATTGCTTTGCATGG GGATGCTGCCCACTCGAGGGTGCCACCTGCTGTGATGACCATTATAGCTGCTGCCCACATGAGTACCCAGTCTGCAACGTTAATGAAGGAACCTGCTTGA TTAGCAAGGGCAACCCATTTGGAGTGAAGGCATTGCGACGCACTCCTGCTAAGCCTCACTGGGCTCACGGAACTGAAGGCAAAAACAGCGTTGCTTGA
AA sequence Show only first row Show all	>Potri.014G024100.1 pacid=42763040 polypeptide=Potri.014G024100.1.p locus=Potri.014G024100 ID=Potri.014G024100.1.v4.1 annot-version=v4.1 MGLFRSSTLMLMLLFLVFALSSAFDMSIISYHQTHATKSSWRTDDEVMAMYEEWLVKHGKNYNALGEKEKRFEIFKDNLMFIDQHNSENRTYTVGLNRFA DLTNEEFRSMYLGTRTGHKKRLPKTSDRYAPRVGDSLPDSVDWRKEGAVAEVKDQGGCGSCWAFSTIAAVEGINKIVTGDLIALSEQELVDCDTSYNEGC NGGLMDYAFEFIINNGGIDTEDDYPYLGRDGRCDTYRKNAKVVSIDSYEDVPENDETALKKAVANQPVSVAIEGGGRNFQLYNSGVFTGECGTSLDHGVA AVGYGTEKGKDYWIVRNSWGKSWGESGYIRMERNIASPTGKCGIAIEPSYPIKKGQNPPNPGPSPPSPVKPPSVCDNYFSCPDSSTCCCIFEYGKYCFAW GCCPLEGATCCDDHYSCCPHEYPVCNVNEGTCLISKGNPFGVKALRRTPAKPHWAHGTEGKNSVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43060			Granulin repeat cysteine prote...		Potri.014G024100 [exp]	0	1	RD21.1
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.017G086200 [exp]	2.44	0.9388	NAC028
AT1G02305			Cysteine proteinases superfami...		Potri.002G184201 [exp]	2.64	0.9423
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Potri.003G058900 [exp]	3.16	0.9361	AATP1.2
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.003G145500 [exp]	6.63	0.9149
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.003G003400 [exp]	6.70	0.9379
AT5G47860			Protein of unknown function (D...		Potri.003G158400 [exp]	8.48	0.9298
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G102800 [exp]	9.16	0.9156	Pt-FIP1.3
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G026325 [exp]	9.53	0.9318
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Potri.001G182000 [exp]	9.89	0.8809
AT1G19260			TTF-type zinc finger protein w...		Potri.014G176150 [exp]	11.48	0.9340

Compare expression of checked genes

Potri.014G024100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.