Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43020 628 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G67200 565 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G50230 509 / 4e-173 Leucine-rich repeat protein kinase family protein (.1) AT1G60630 391 / 1e-127 Leucine-rich repeat protein kinase family protein (.1) AT1G10850 281 / 3e-85 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 263 / 1e-78 RKL1 receptor-like kinase 1 (.1) AT3G08680 244 / 8e-72 Leucine-rich repeat protein kinase family protein (.1.2) AT1G64210 236 / 2e-69 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 236 / 1e-68 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 236 / 1e-68 RLK902 receptor-like kinase 902 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G046900 [exp] 612 / 0 AT5G43020 575 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G141200 [exp] 592 / 0 AT5G67200 734 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G144900 [exp] 400 / 6e-131 AT1G10850 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G097200 [exp] 394 / 2e-128 AT1G10850 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 276 / 1e-83 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 272 / 4e-82 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.015G035500 [exp] 249 / 2e-73 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.010G121700 [exp] 246 / 6e-72 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G068800 [exp] 234 / 8e-68 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018733 [exp] 648 / 0 AT5G43020 687 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10024803 [exp] 637 / 0 AT5G43020 678 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036426 [exp] 574 / 0 AT5G67200 765 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041101 [exp] 567 / 0 AT5G67200 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013073 [exp] 288 / 7e-88 AT1G10850 820 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029075 [exp] 286 / 7e-87 AT1G10850 825 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035012 [exp] 222 / 3e-63 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 221 / 3e-63 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029005 [exp] 223 / 5e-63 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10027568 [exp] 220 / 5e-63 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.014G024400.1 pacid=42763874 polypeptide=Potri.014G024400.1.p locus=Potri.014G024400 ID=Potri.014G024400.1.v4.1 annot-version=v4.1 ATGCTGCTTGTTTTGCTTTCAACTTCTCATTTTTTACTCTGTTTTTTCATCACAGTAGCTTCTTCTACTGCTCCTGCATCAAATTTGCCTGCACCACCTG ATGCTACAGCTCTTCTTGCCTTCAAATATAAAGCGGACCTGAACAAAAACCTTCCATTTTCTCAAAACACAACCTTCCATTTCTGTCAATGGCCAGGAGT CAAATGCTTTCAACAAAAAATCATCCGCCTAGTTCTCCGAGACTCAGATCTTGGTGGCATTTTCGCTCCCAAAACTTTAACTTTCCTCGACCAGCTCCGT GTCCTTGGTCTCCAAAACAACTCCTTAACCGGACCCATCCCTTACGACCTCTCCAAACTTACCAATCTCAAATCACTTTTTCTTGATCACAATTCCTTCT CGGGCTCTTTCCCTCCTCCACTTCTTTCCCTTCACAGGCTCCGCACTCTAGATTTATCCCATAACAATCTCTCCGGTCCTATTCCCTCTGCTTTAATCTC TCTAGACCGGTTGTACTATCTTCGTCTTGACAGGAACCTGTTCAATGGCTCCATCCCTCCATTAAACCAATCCTCTCTTTTAACTCTCAACGTTTCTTTC AACAATCTTAGTGGTGCAATCCCAGTGACACCTACATTACTTCGTTTTGATCTTTCCTCCTTTTCATCAAATCCTAGCCTTTGTGGAAAGATTATACACA AAGAATGCCACCCCGCTTCCCCATTTTTCGGCCCATCTCCAGCGGCAGTGACGGTGGCTCCACCGCCGGCCGTTGTAGTTAGTCAAAACCAGGCATTACA AGGCGTTGACTTGGCACAGAGCGGTCAAAAAACGAAGCACAAGAAAAATGTTTTGATCATTGGGTTTTCATCAGGTGCATTTGTTCTCCTTGGTTCGGTT ATTTGTTTTGTCATCGCTGCCAAGAAACAGAAAACACAAAAGAAATCGACGGCTGCGACTGCCTCTGCTGGGATTATTGGACCCACCGCAGAATCAGTGG CTGTGATGCAGATAGATCGACAAGAGAATGAGTTAGAAGAGAAAGTGAAGAGAGTGCAAGGGCTGCATGTGGGCAAGAGTGGGAGTTTAGCATTCTGTGC GGGTGAGGCACATCTTTATTCGTTGGATCAGCTAATGAGAGCCTCAGCTGAGTTGCTAGGGAGAGGAACCATGGGGACCACTTATAAAGCAGTGTTGGAC AACCGTCTGATTGTGTGTGTAAAGCGGCTTGATGCAAGTAAATTATCGGATGGAAGCAAAGAGGTTTTCGAACCACACATGGAATCAGTTGGCGGACTTA GGCACCCTAACTTGGTGCCTCTTAGGGCTTATTTTCAAGCTCGAGAGGAAAGGCTTCTAATCTATGATTACCAGCCCAATGGCAGTCTCTTCTCCCTAAT TCATGGTTCAAAATCAACAAGAGCAAAACCACTACATTGGACATCATGTCTTAAAATAGCAGAGGATGTAGCCCGAGGCCTTTCTTATATCCACCAAGCA TGGAGGCTTGTCCATGGAAATCTCAAGTCTTCTAATGTCCTTCTTGGCCCAGATTTTGAGGCATGTGTGAGTGACTATTGCCTTGCCGTTCTTGCCAATT CACCGATTGATGATGAGGATGACCCCGATGCATCGGCTTACAAAGCCCCAGAAACTCGCAGTTCGAGTCAACAGGCAACTTCCAAGTCTGATGTTTATGC ATTTGGAGTATTATTACTCGAGCTCATAACTGGCAAGCCTCCATCACTGCTGCCTCTCCCACAAGATGTGGTAAATTGGGTTAGGTCTACTAGGGGCAAT CATCAAGACGATGGTGCTGGAGAAGATAATAGGCTAGAAATGCTTCTTGAGGTGGCTATTGCTTGTAGCTTGACCTCACCTGAGCAGAGGCCCACTATGT GGCAAGTCTTGAAGATGTTACAGGAAATTAAAGAGACTGTTTTGCTAGAGGATAGTGAATTAGACCTGCAAACTGGGATGCCCTAA
AA sequence Show only first row Show all	>Potri.014G024400.1 pacid=42763874 polypeptide=Potri.014G024400.1.p locus=Potri.014G024400 ID=Potri.014G024400.1.v4.1 annot-version=v4.1 MLLVLLSTSHFLLCFFITVASSTAPASNLPAPPDATALLAFKYKADLNKNLPFSQNTTFHFCQWPGVKCFQQKIIRLVLRDSDLGGIFAPKTLTFLDQLR VLGLQNNSLTGPIPYDLSKLTNLKSLFLDHNSFSGSFPPPLLSLHRLRTLDLSHNNLSGPIPSALISLDRLYYLRLDRNLFNGSIPPLNQSSLLTLNVSF NNLSGAIPVTPTLLRFDLSSFSSNPSLCGKIIHKECHPASPFFGPSPAAVTVAPPPAVVVSQNQALQGVDLAQSGQKTKHKKNVLIIGFSSGAFVLLGSV ICFVIAAKKQKTQKKSTAATASAGIIGPTAESVAVMQIDRQENELEEKVKRVQGLHVGKSGSLAFCAGEAHLYSLDQLMRASAELLGRGTMGTTYKAVLD NRLIVCVKRLDASKLSDGSKEVFEPHMESVGGLRHPNLVPLRAYFQAREERLLIYDYQPNGSLFSLIHGSKSTRAKPLHWTSCLKIAEDVARGLSYIHQA WRLVHGNLKSSNVLLGPDFEACVSDYCLAVLANSPIDDEDDPDASAYKAPETRSSSQQATSKSDVYAFGVLLLELITGKPPSLLPLPQDVVNWVRSTRGN HQDDGAGEDNRLEMLLEVAIACSLTSPEQRPTMWQVLKMLQEIKETVLLEDSELDLQTGMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43020			Leucine-rich repeat protein ki...		Potri.014G024400 [exp]	0	1
AT2G23360			Plant protein of unknown funct...		Potri.007G046100 [exp]	2.64	0.8911
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G129300 [exp]	4.00	0.8871
AT1G70140		ATFH8	formin 8 (.1)		Potri.008G192900 [exp]	4.58	0.8634
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.005G257000 [exp]	4.69	0.8115	Pt-HMG1.2
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Potri.004G054300 [exp]	6.92	0.8614
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G081200 [exp]	8.94	0.8614
					Potri.001G410554 [exp]	8.94	0.8537
AT1G67590			Remorin family protein (.1.2)		Potri.008G178300 [exp]	10.81	0.7861
					Potri.005G162201 [exp]	11.22	0.8570
					Potri.010G159650 [exp]	11.83	0.8510

Compare expression of checked genes

Potri.014G024400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.