Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47820 1581 / 0 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 1112 / 0 KICP-02 ATP binding microtubule motor family protein (.1) AT5G60930 566 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 248 / 3e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G45850 245 / 4e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 242 / 5e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 236 / 4e-64 ATP binding microtubule motor family protein (.1) AT3G19050 238 / 8e-64 POK2 phragmoplast orienting kinesin 2 (.1) AT3G44050 233 / 9e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G17360 232 / 3e-62 POK1 phragmoplast orienting kinesin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G123500 [exp] 1894 / 0 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G046700 [exp] 1476 / 0 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G106000 [exp] 943 / 0 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 836 / 0 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G233700 [exp] 256 / 6e-71 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 252 / 2e-69 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 251 / 6e-69 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 245 / 2e-67 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 244 / 9e-67 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024805 [exp] 1684 / 0 AT5G47820 1599 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018731 [exp] 1682 / 0 AT5G47820 1600 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010047 [exp] 1632 / 0 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000762 [exp] 589 / 0 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000392 [exp] 580 / 0 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018120 [exp] 253 / 1e-69 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 251 / 4e-69 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10027934 [exp] 248 / 4e-67 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10009073 [exp] 242 / 6e-66 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10012048 [exp] 244 / 7e-66 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.014G024700.2 pacid=42762538 polypeptide=Potri.014G024700.2.p locus=Potri.014G024700 ID=Potri.014G024700.2.v4.1 annot-version=v4.1 ATGGAAGCTCCTCCTTCGCCTAGTCCTGCCTCTCCTGCTACAAACGGAGGAGAGGATTGTTGTGTCAAAGTTGCTGTTCATATAAGACCACTCATCGCCG ATGAGCGAGCTCAAGGTTGTAAAGATTGTGTCACTGTCGTGTCTGGAAAGCCTCAGGTACAAATAGGCACACATTCATTTACCTTTGATCATGTCTATGG GAGTAGTGGCACTCCTTCATCTGCTATGTTTGAAGATTGTATTGCCCCATTAGTTGATGGTTTATTCCAAGGATATAATGCGACTGTTCTTGCTTATGGT CAGACGGGATCTGGGAAGACATATACAATGGGAACTGGCTTCAAAGATGGTTTCCAGATGGGAGTTATTCCTCAAGTCATGAATGTTCTATTCAGAAAGA TTGAAACTTTAAAACATCAAACCGAATTCCAACTTCACGTTTCTTTCATTGAGATTCTGAAAGAAGAAGTAAGAGATTTGCTGGATCCTACGACTTTGAA CAAATCAGATACTGCAAATGGGCACACAGGTAAAGTAAATCTCCCAGGGAAACCACCAATACAAATTCGTGAGACTTCAAATGGTGTCATAACACTAGCA GGATCGACAGAAGTTAGTGTTTGTACATTTAAAGAAATGGCTGCTTGCCTAGAACAAGGATCATTGTGCAGGGCAACAGGGAGCACAAATATGAACAATC AATCGAGTCGTTCACATGCCATCTTCACCATCACCTTAGAGCAAATGCGTAAGCTCAATCCAGTTTTCCCTGGCGATAGCAATCCAAACGACAGTATGAA TGAAGAGTATCTGTGTGCAAAGTTGCATTTAGTAGATCTTGCTGGATCTGAGAGAGCCAAGAGGACTGGTTCTGATGGCATGCGTTTTAAGGAAGGAGTT CACATCAATAAGGGCCTTCTTGCACTTGGAAACGTTATCAGTGCACTTGGTGATGAGAAAAAGCGAAAAGAAGGTGTTCATGTTCCATATCGAGACAGTA AATTGACTCGGCTTCTGCAGGATTCGCTTGGTGGTAACAGCAGAACTGTTATGATAGCTTGCATTAGTCCAGCTGATATCAATGCTGAGGAAACCCTCAA CACCCTAAAGTATGCAAATCGTGCCCGCAATATCCAAAATAAGCCTGTTGTTAATAGAGATCCGATGTCCAGTGAGATGCTAAAGATGCGCCAACAGCTT GAGTATTTGCAAGCAGAACTTTTTGCCCGTGGAGGAGGATGTTCATCAGATGAAATTCAGGTTCTCAAGGAAAGGATTGCTTGGCTTGAAGCTGCCAATG AGGACCTTTGTCGTGAACTTCATGAATACCGCAGCAGATGCACCACTGTAGAGCAACGTGAAACAGATGCTCAAGATGGCAGTATCTGTTCTGTGAAAAC TGATGGGCTTAAAAGGAGCTTGCATAGTATAGAGTCACCAGATTATCAAATGGGTGAAACTATTCCTGCAGGAGACTCCAGGGAAATTGATGAAGAAGTA GCGAAAGAATGGGAGCACACGCTTTTGCAGAATACCATGGACAAAGAATTGCATGAATTGAACAGACGTTTGGAGGAGAAAGAGTCAGAGATGAAACTTT TTGGAGGGGCTGACACTGCAGCTCTCAAGCAACACTTTGGCAAGAAAATCATGGAATTGGAGGATGAAAAAAGAGCCGTGCAGCGAGAGAGGGATCGCCT GCTGGCTGAAATTGAAAATCTTTCTGCTAGCTCTGACGGGCAAAAATTGCAAGATATCCATGCCCAGAAATTAAAAACTCTTGAGGCACAGATTATGGAT CTTAAGAAGAAACAAGAGAACCAAGTTCAGCTTTTAAAGCAAAAACAAAAAAGTGATGAAGCAGCAAAGCGATTACAAGATGAAATTCAATATATAAAGG CACAAAAGGTTCAGTTGCAACACAGGATCAAACAAGAGGCAGAACAATTCCGACAGTGGAAGGCCTCTCGGGAAAAGGAACTGCTGCAGTTACGGAAAGA AGGGAGAAGAAATGAATATGAAAGGCATAAGCTACAAGCTATAAACCAGCGCCAGAAAATGGTTCTTCAAAGAAAGACAGAAGAGGCTGCAATGGCTACC AAGAGGTTAAAAGAGCTGCTTGAAGCTCGAAAATCTTCTGCACGAGACAACTCAGCTATCTCCAATGGAAATGGAGCAAATGGTCAGAGCAATGAGAAAT CCTTGCAACGTTGGCTTGATCATGAGCTGGAGGTCATGGTAAATGTGCATGAAGTCCGCTTTGAATATGAGAAGCAAAGCCAAGTGCGAGCTGCACTGGC AGAAGAGTTGGCTGTGTTGAAGCAAGTAGATGACTTTGCTTCAAAAGGATTGAGTCCTCCACGAGGAAAGAACGGATTTGCAAGGGCTTCTTCTATGTCA CCAAATGCGAGAATGGCCAGAAAATCATCACTTGAAAACATGTTGAGCATATCGTCTAATTCTCTTGTTGCAATGGCTTCACAACTTTCAGAAGCAGAGG AGCGAGAGCGTGCATTTACAAACCGTGGACGTTGGAATCAGCTTCGTTCCATGGGAGATGCGAAGAATTTGCTTCAGTATATGTTTAATTCTCTGGGAGA TGCCAGGTGTCAACTATGGGAGAAGGAAATGGAAATAAAAGAAATGAAGGAGCAATTCAAAGAACTTGTAGGTCTATTGCGACAAAGTGAATCACAAAGA AAAGAAGCTGAAAAGGAGCTAAAATTGAGAGAGCAAGCACTTGCCGTGGCTTTGGCTACAGCAGCCTCTGCTGACCAAGAACAGAGGAACTCCCACAATT CACTGAAACATTTCAATGATGACATGAGTGGTCCACTGTCTCCAGTGTCTGTGCCGGCACAGAAACAGCTAAAATATACGCCAGGAGTTGCTAATGGTTC AGTCAAAGAGTCAGCCGCATTCATAGATCAGACCAGAAAGATGGTGCCACTTGGGCAGTTGTCAATGAGAAAATTAGCAGCTGTAGGGCAAGGCGGGAAG TTATGGAGGTGGAAGAGAAGTCATCACCAGTGGCTTTTACAATTCAAATGGAAGTGGCAGAAACCATGGAGACTGTCAGAATTGATCAGGCACAGTGATG TAATGGTTATGAGGGCAAAGGCTCGTCAACAGGCTGCTCTGCCACGTAAAGTATGA
AA sequence Show only first row Show all	>Potri.014G024700.2 pacid=42762538 polypeptide=Potri.014G024700.2.p locus=Potri.014G024700 ID=Potri.014G024700.2.v4.1 annot-version=v4.1 MEAPPSPSPASPATNGGEDCCVKVAVHIRPLIADERAQGCKDCVTVVSGKPQVQIGTHSFTFDHVYGSSGTPSSAMFEDCIAPLVDGLFQGYNATVLAYG QTGSGKTYTMGTGFKDGFQMGVIPQVMNVLFRKIETLKHQTEFQLHVSFIEILKEEVRDLLDPTTLNKSDTANGHTGKVNLPGKPPIQIRETSNGVITLA GSTEVSVCTFKEMAACLEQGSLCRATGSTNMNNQSSRSHAIFTITLEQMRKLNPVFPGDSNPNDSMNEEYLCAKLHLVDLAGSERAKRTGSDGMRFKEGV HINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSSEMLKMRQQL EYLQAELFARGGGCSSDEIQVLKERIAWLEAANEDLCRELHEYRSRCTTVEQRETDAQDGSICSVKTDGLKRSLHSIESPDYQMGETIPAGDSREIDEEV AKEWEHTLLQNTMDKELHELNRRLEEKESEMKLFGGADTAALKQHFGKKIMELEDEKRAVQRERDRLLAEIENLSASSDGQKLQDIHAQKLKTLEAQIMD LKKKQENQVQLLKQKQKSDEAAKRLQDEIQYIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQAINQRQKMVLQRKTEEAAMAT KRLKELLEARKSSARDNSAISNGNGANGQSNEKSLQRWLDHELEVMVNVHEVRFEYEKQSQVRAALAEELAVLKQVDDFASKGLSPPRGKNGFARASSMS PNARMARKSSLENMLSISSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGDAKNLLQYMFNSLGDARCQLWEKEMEIKEMKEQFKELVGLLRQSESQR KEAEKELKLREQALAVALATAASADQEQRNSHNSLKHFNDDMSGPLSPVSVPAQKQLKYTPGVANGSVKESAAFIDQTRKMVPLGQLSMRKLAAVGQGGK LWRWKRSHHQWLLQFKWKWQKPWRLSELIRHSDVMVMRAKARQQAALPRKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.014G024700 [exp]	0	1
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.002G025200 [exp]	1.00	0.9317
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Potri.002G253200 [exp]	2.82	0.8902
AT2G22560			Kinase interacting (KIP1-like)...		Potri.005G147300 [exp]	3.87	0.8902
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Potri.002G176700 [exp]	6.32	0.8494	CRK3
AT4G32160			Phox (PX) domain-containing pr...		Potri.018G026000 [exp]	7.07	0.8412
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.001G448400 [exp]	7.93	0.8768
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	8.60	0.8952
AT5G13090			unknown protein		Potri.001G059400 [exp]	9.48	0.8668
AT3G51580			unknown protein		Potri.006G108400 [exp]	11.74	0.8842
					Potri.007G007000 [exp]	12.36	0.8688

Compare expression of checked genes

Potri.014G024700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.