Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57870 251 / 5e-87 SCE1A, SCE1, AHUS5, EMB1637, ATSCE1 SUMO CONJUGATING ENZYME 1A, EMBRYO DEFECTIVE 1637, sumo conjugation enzyme 1 (.1) AT2G02760 96 / 1e-25 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT1G14400 94 / 8e-25 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT5G62540 92 / 2e-24 UBC3 ubiquitin-conjugating enzyme 3 (.1) AT3G08690 79 / 3e-19 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT1G64230 77 / 2e-18 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT4G27960 77 / 2e-18 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G53300 77 / 3e-18 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G41700 76 / 4e-18 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT2G16740 72 / 1e-16 UBC29 ubiquitin-conjugating enzyme 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024950 [exp] 292 / 4e-103 AT3G57870 291 / 6e-103 SUMO CONJUGATING ENZYME 1A, EMBRYO DEFECTIVE 1637, sumo conjugation enzyme 1 (.1) Potri.002G123600 [exp] 281 / 1e-98 AT3G57870 283 / 1e-99 SUMO CONJUGATING ENZYME 1A, EMBRYO DEFECTIVE 1637, sumo conjugation enzyme 1 (.1) Potri.005G141100 [exp] 247 / 3e-85 AT3G57870 303 / 1e-107 SUMO CONJUGATING ENZYME 1A, EMBRYO DEFECTIVE 1637, sumo conjugation enzyme 1 (.1) Potri.015G064000 [exp] 100 / 4e-27 AT2G02760 284 / 3e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.013G064400 [exp] 97 / 6e-26 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.019G039200 [exp] 96 / 1e-25 AT2G02760 285 / 2e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.001G094900 [exp] 80 / 2e-19 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.012G033000 [exp] 79 / 3e-19 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.015G023300 [exp] 79 / 3e-19 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019328 [exp] 254 / 4e-88 AT3G57870 308 / 3e-109 SUMO CONJUGATING ENZYME 1A, EMBRYO DEFECTIVE 1637, sumo conjugation enzyme 1 (.1) Lus10009376 [exp] 254 / 6e-88 AT3G57870 306 / 7e-109 SUMO CONJUGATING ENZYME 1A, EMBRYO DEFECTIVE 1637, sumo conjugation enzyme 1 (.1) Lus10019327 [exp] 252 / 3e-87 AT3G57870 308 / 2e-109 SUMO CONJUGATING ENZYME 1A, EMBRYO DEFECTIVE 1637, sumo conjugation enzyme 1 (.1) Lus10009377 [exp] 251 / 1e-86 AT3G57870 306 / 1e-108 SUMO CONJUGATING ENZYME 1A, EMBRYO DEFECTIVE 1637, sumo conjugation enzyme 1 (.1) Lus10037203 [exp] 95 / 3e-25 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10036727 [exp] 95 / 3e-25 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10030786 [exp] 92 / 3e-24 AT2G02760 305 / 2e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10013263 [exp] 91 / 2e-23 AT2G02760 304 / 6e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10039323 [exp] 80 / 1e-19 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027570 [exp] 80 / 1e-19 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF00179 [poplar] [flax] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Potri.014G024801.1 pacid=42764417 polypeptide=Potri.014G024801.1.p locus=Potri.014G024801 ID=Potri.014G024801.1.v4.1 annot-version=v4.1 ATGTCAGGAGGAGGCATAGCTCGTGGTCGTCTTGCTGAAGAGAGAAAGTCATGGCGTAAGAATCATCCCCACGGTTTTGTGGCTAAGCCTGATAATGCAC AAGATGGTTCTCTTGATTTGATGGTGTGGAAGTGCATCATACCTGGCAAACCCGGGACAGATTGGGAGGGTGGCTTCTTCCCCCTCACGCTTCATTTTAG CGAGGACTACCCAAGCAAACCTCCAAAGTGCAAGTTCCCCCCGGGTTTCTTCCATCCTAATGTCTACCCTTCTGGAACTGTGTGCTTATCTATCCTCAAT GAGGACTATGGCTGGAGACCAGCCATAACTGTGAAGCAAATTTTAGTTGGCATTCAGGATTTGCTTGATCAACCAAATCCTGCTGATCCTGCGCAAACTG ATGGCTACCAGCTTTTTGTCCAGGACCCGACTGAGTACAGGAGAAAGGTGCGCCAACAAGCCAAGCAATATCCACCTGCGCTCTGA
AA sequence Show only first row Show all	>Potri.014G024801.1 pacid=42764417 polypeptide=Potri.014G024801.1.p locus=Potri.014G024801 ID=Potri.014G024801.1.v4.1 annot-version=v4.1 MSGGGIARGRLAEERKSWRKNHPHGFVAKPDNAQDGSLDLMVWKCIIPGKPGTDWEGGFFPLTLHFSEDYPSKPPKCKFPPGFFHPNVYPSGTVCLSILN EDYGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFVQDPTEYRRKVRQQAKQYPPAL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.014G024801 [exp]	0	1
AT2G30150			UDP-Glycosyltransferase superf...		Potri.001G281800 [exp]	8.30	0.8303
AT3G05200		ATL6	RING/U-box superfamily protein...		Potri.013G025800 [exp]	16.43	0.8591
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.008G128500 [exp]	20.49	0.8380	MYB194
AT5G43260			chaperone protein dnaJ-related...		Potri.001G056601 [exp]	31.62	0.8491
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.014G140700 [exp]	37.13	0.7816
AT5G61510			GroES-like zinc-binding alcoho...		Potri.004G233800 [exp]	43.82	0.7974	Pt-TED2.2
AT3G17810		PYD1	pyrimidine 1 (.1)		Potri.015G030600 [exp]	44.89	0.8451
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.007G140300 [exp]	45.25	0.8262	ZOG1.10
AT1G25400			unknown protein		Potri.008G121700 [exp]	56.21	0.7894
AT1G25520			Uncharacterized protein family...		Potri.008G117900 [exp]	56.44	0.8322

Compare expression of checked genes

Potri.014G024801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.