Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G06536 172 / 9e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G06534 152 / 2e-41 unknown protein AT4G09310 45 / 9e-05 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09200 45 / 9e-05 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09250 45 / 0.0001 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G123800 [exp] 825 / 0 AT4G06536 174 / 3e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010045 [exp] 385 / 3e-130 AT4G06536 149 / 6e-43 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Lus10018730 [exp] 380 / 3e-130 AT4G06536 173 / 2e-53 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Lus10010241 [exp] 268 / 1e-86 AT4G06536 140 / 1e-40 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Lus10024806 [exp] 199 / 3e-61 AT4G06534 72 / 2e-14 unknown protein Lus10020190 [exp] 51 / 1e-06 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009445 [exp] 50 / 1e-06 AT1G35470 188 / 4e-56 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009316 [exp] 45 / 0.0001 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10006084 [exp] 42 / 0.0007 AT1G35470 101 / 7e-23 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00622 [poplar] [flax] SPRY SPRY domain
Representative CDS sequence Show only first row Show all	>Potri.014G025000.1 pacid=42763357 polypeptide=Potri.014G025000.1.p locus=Potri.014G025000 ID=Potri.014G025000.1.v4.1 annot-version=v4.1 ATGCTCGTGTTGATACATTTTTGGTGGGCAGGGGGTGCGGTTGTAGTTGGTTCAATGATTTTTGCCTTGGCAGTTTGGCGATGTTTTTGTTTCAAAGACC GTAGAGGTACTGTTGATCCGTTAAGAACCAATGGAACTTCAAGCTTGCAGGATGGGATTGCAAAGCTTCACCAAGGGAGTATACATCACCAACCTGGTCA ATATGAAACCAAAAGAAGAGGAAATTATTATGTTTTTCGTCGTGGGGTTTCTACAAGACCTTTGTTCAATTGGGCTGATCACCCGGCGCTTATTACTGAC GCGGTCGAAAATGGATGGTCTAGATTTTGTTTTACAAGCTACATGCCATCTCCTTCCACGCGATCATCCATGTTAGGTTTATGTGCCGCTGGTGATCCTG GAAGAGAAACAGATACAGAGATAAGCTGGGAAGTTTGTCAAGGATCAGCTGATTTTATGCAAAAGATAAGGCTGAATTCAGGGTTAAAGAAGGTTAATGT AAGCAATCCTTCTCTGTCTGCTGCTTCTGTAATTAGAACTGCTTTGCCTTTACCAGGGCCTCCACTGGGGAACTCTTCTTTTCCCCAAGAAGCCTATTTT GAGATCACAGTTTTGTATTCCCATGGCGACGATCAAGAATCTGCTGGCAAGGCTAAGGAAGGTGAGAGGGCTAAACTCATCCAAGAAAAACCTAATGCAA AAGCGAATTCAGAATCTTTAGTGCATGTAAGCAGCAGCAGAATAAGCAAAATTGAAGAATTAAAGCTCGCCGGCAAAGATGATTGTCAAGGTTCAGCAGT TATGCTATCTGTTGGGCTCACTATTGGAGGCTCTCTTCCCTTGAAACTTCCTGGAAGCTATCCAGGATCGATTGGATTCAACTCCAACGGTTCTCTCTAT CTTGATGGTATGGAGCTTGTGTTTGAATCCGAGAAAGCGGAATGGGCAAGAGCAGATAAAGTAATTGGCTGTGGATTTGATCCCAGGAATAAACAAGTGT TTTTCACAGTAGATGGAGAGCTGCTACATGTAGTTCATTGCAAGACAGAGGAATTCGGGACACCCCTCTACCCAACAATTGCAGCAAACAATAACATATT GGTTCTTGTCAATTTCGGACAAAGTGCCTTCAGTTATGCACGTGCAAATGCTCAAAGAACACCAAATCCTTGCTTCATTGGCCCTCTCGTAAAGTCCCCT ACATTGGGCTATGATGATAGCATGGAGCTCTTCTCAATGGGAAGAATCGACTCTCAGTGGCTCAATAGAAGTACCACCAAGGACAGCCACATCAATGGAG CTAATAATCAAGGGCTTGACTTCGATGACGAGTCTGAGGCTGATTTATTTGAAATTGTCTTGGATAATGGCACAGGAAGATCTCCAAACACCAGGCCTTA G
AA sequence Show only first row Show all	>Potri.014G025000.1 pacid=42763357 polypeptide=Potri.014G025000.1.p locus=Potri.014G025000 ID=Potri.014G025000.1.v4.1 annot-version=v4.1 MLVLIHFWWAGGAVVVGSMIFALAVWRCFCFKDRRGTVDPLRTNGTSSLQDGIAKLHQGSIHHQPGQYETKRRGNYYVFRRGVSTRPLFNWADHPALITD AVENGWSRFCFTSYMPSPSTRSSMLGLCAAGDPGRETDTEISWEVCQGSADFMQKIRLNSGLKKVNVSNPSLSAASVIRTALPLPGPPLGNSSFPQEAYF EITVLYSHGDDQESAGKAKEGERAKLIQEKPNAKANSESLVHVSSSRISKIEELKLAGKDDCQGSAVMLSVGLTIGGSLPLKLPGSYPGSIGFNSNGSLY LDGMELVFESEKAEWARADKVIGCGFDPRNKQVFFTVDGELLHVVHCKTEEFGTPLYPTIAANNNILVLVNFGQSAFSYARANAQRTPNPCFIGPLVKSP TLGYDDSMELFSMGRIDSQWLNRSTTKDSHINGANNQGLDFDDESEADLFEIVLDNGTGRSPNTRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.014G025000 [exp]	0	1
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	2.44	0.8989
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.010G240800 [exp]	2.44	0.8965
AT1G05280			Protein of unknown function (D...		Potri.017G039600 [exp]	2.64	0.8786
AT1G13360			unknown protein		Potri.010G126000 [exp]	4.58	0.8590
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.005G220700 [exp]	4.89	0.8927	Pt-CYP94.7
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.006G202700 [exp]	6.00	0.8684
AT4G29050			Concanavalin A-like lectin pro...		Potri.003G196600 [exp]	6.92	0.8824
AT3G28450			Leucine-rich repeat protein ki...		Potri.001G349900 [exp]	7.14	0.8953
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.008G051200 [exp]	7.87	0.8391
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Potri.010G043900 [exp]	8.94	0.8769

Compare expression of checked genes

Potri.014G025000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.