Plant FIBer expression Database

Potri.014G025100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52010 441 / 5e-154 C2H2ZnF C2H2-like zinc finger protein (.1)
AT4G12240 206 / 1e-62 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G114700
[exp]
215 / 1e-65 AT4G12240 424 / 5e-148 zinc finger (C2H2 type) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024807
[exp]
457 / 5e-160 AT5G52010 456 / 6e-160 C2H2-like zinc finger protein (.1)
Lus10018728
[exp]
377 / 2e-130 AT5G52010 375 / 5e-130 C2H2-like zinc finger protein (.1)
Lus10032208
[exp]
191 / 7e-57 AT4G12240 402 / 5e-140 zinc finger (C2H2 type) family protein (.1)
Lus10018729
[exp]
136 / 7e-38 AT5G52010 136 / 2e-38 C2H2-like zinc finger protein (.1)
Lus10024570
[exp]
94 / 6e-22 AT4G12240 234 / 3e-76 zinc finger (C2H2 type) family protein (.1)
PFAM info
Representative CDS sequence
>Potri.014G025100.1 pacid=42762377 polypeptide=Potri.014G025100.1.p locus=Potri.014G025100 ID=Potri.014G025100.1.v4.1 annot-version=v4.1
ATGACTCCTCTCTGCAAAGCCATAGACACCACCACAGCTTCTCTACTAAAACCCTCAATTATCCTCCACAAAACACCCCTTAACTTTTGCCACTCTCTCA
ATTACACCCCTAATCTCAGCAACAACAACCTCACTCTCACTTCAAAACCGCCACAAAACCACCTCCGCCCAATCACCGCCACAGCCAACGCCAGCCACCC
AGCTGCGACATCCGAAATCGACATGGTAAAAAACAGACAAGGAATCTACACGTCAAAACAGAACAAAGTTGTTGTTTTATGGGACCTCGACAACAAACCC
CCACGTGGGCCGCCGTACCCGGCGGCTATGGCATTAAAAACAGTAGCACAAAGATTCGGTGAGGTAATCGACATGTGTGCATACGCTAACCGGCACGCGT
TTATTCATTTGCCACACTGGGTGCTTGAAGAAAGGCGTGAGAGAAAACACTTGGACATTTTGGAGAGAAAAGAAATTGTAAGCCCTTCACAGCCTTATGT
CTGTGGCGTTTGTGGGCGCAAATGTAAGACTAATTTGGATTTGAAGAAGCATTTTAAGCAATTACATGAGAGGGAAAGACAGAAGAAGGTGAACAGAATG
AGATCGTTGAAAGGGAAAAAACGGCAGCGATATAAGGAGAGGTTTGTATCTGGGAATCATAAGTACAATGAGGAAGCAAGGAGGTTGTTAACTCCGAAAA
TTGGGTATGGGTTAGCCGCAGAGTTGAAGAGAGCTGGGGTTTACGTGAAGACAGTGGAGGATAAGCCACAAGCTGCAGATTGGGCATTGAAGAGACAAAT
TGAGCATTCAATGAGTAGAGGGGTGGATTGGTTGGTTTTGGTTTCAGATGATTCGGATTTTTCGGAGATTTTAAGGAAGGCGAGGGAGGCCAATTTGGGT
ACTGTCGTGGTGGGGGATAGGGATAGAGCATTGGGGAGGCATGCTGATTTGTGGGTTCCATGGATTGGGGTTGAGAATGGGGAGCTGACTGAGAAGGATT
TGGTGCCGAAAGGTAGGTGGAGGAGTGAGGATTTGGAAAATGATGAGGGGTTGTTTTCGGTTACGGATTTTGATGAGGATGGTGATTACGGGGGGAATGA
TTTGGAGGGATTTGTTGATGGACTTGTAATGGTGAGGTCTGGGTTTAATGGTACGAGGATTTCAGCTTTTTCAGAAGGGGAAGAGGAAGATGAGCAGGAT
TATTTGTTATATGATAGTGAGTATGAGGAAATTGAACTTGAAGATGGGGGTTTTTGGTAA
AA sequence
>Potri.014G025100.1 pacid=42762377 polypeptide=Potri.014G025100.1.p locus=Potri.014G025100 ID=Potri.014G025100.1.v4.1 annot-version=v4.1
MTPLCKAIDTTTASLLKPSIILHKTPLNFCHSLNYTPNLSNNNLTLTSKPPQNHLRPITATANASHPAATSEIDMVKNRQGIYTSKQNKVVVLWDLDNKP
PRGPPYPAAMALKTVAQRFGEVIDMCAYANRHAFIHLPHWVLEERRERKHLDILERKEIVSPSQPYVCGVCGRKCKTNLDLKKHFKQLHERERQKKVNRM
RSLKGKKRQRYKERFVSGNHKYNEEARRLLTPKIGYGLAAELKRAGVYVKTVEDKPQAADWALKRQIEHSMSRGVDWLVLVSDDSDFSEILRKAREANLG
TVVVGDRDRALGRHADLWVPWIGVENGELTEKDLVPKGRWRSEDLENDEGLFSVTDFDEDGDYGGNDLEGFVDGLVMVRSGFNGTRISAFSEGEEEDEQD
YLLYDSEYEEIELEDGGFW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52010 C2H2ZnF C2H2-like zinc finger protein ... Potri.014G025100
[exp]
0 1
AT2G46820 PSI-P, TMP14, P... THYLAKOID MEMBRANE PHOSPHOPROT... Potri.014G106400
[exp]
3.74 0.9704 TMP14.2
AT3G15110 unknown protein Potri.011G097800
[exp]
5.74 0.9665
AT1G64770 PnsB2, NDH45, N... Photosynthetic NDH subcomplex... Potri.019G034100
[exp]
5.91 0.9641
AT4G00050 bHLH bHLH016, UNE10 unfertilized embryo sac 10, ba... Potri.002G143300
[exp]
8.48 0.9655
AT5G55220 trigger factor type chaperone ... Potri.015G065900
[exp]
10.39 0.9630
AT1G69935 SHW1 short hypocotyl in white light... Potri.008G190900
[exp]
10.58 0.9638
Potri.014G158501
[exp]
10.95 0.9572
AT2G37220 RNA-binding (RRM/RBD/RNP motif... Potri.006G127200
[exp]
12.24 0.9600 RBP29.2
AT3G44620 protein tyrosine phosphatases;... Potri.009G146800
[exp]
13.19 0.9638
AT1G48570 zinc finger (Ran-binding) fami... Potri.012G046500
[exp]
13.96 0.9414

Potri.014G025100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.