Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G46480 227 / 4e-75 HD WOX4 WUSCHEL related homeobox 4 (.1) AT3G18010 109 / 2e-28 HD WOX1 WUSCHEL related homeobox 1 (.1) AT3G11260 103 / 2e-27 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT2G28610 101 / 4e-26 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT5G59340 100 / 2e-25 HD WOX2 WUSCHEL related homeobox 2 (.1) AT2G17950 98 / 1e-24 HD WUS1, PGA6, WUS WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) AT5G05770 93 / 3e-24 HD WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1) AT2G01500 91 / 7e-22 HD WOX6, PFS2, HOS9 WUSCHEL RELATED HOMEOBOX 6, PRETTY FEW SEEDS 2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, Homeodomain-like superfamily protein (.1) AT2G33880 71 / 3e-14 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) AT4G35550 67 / 3e-13 HD HB-4, WOX13, ATWOX13 WUSCHEL related homeobox 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124100 [exp] 419 / 1e-151 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1) Potri.009G029200 [exp] 106 / 4e-28 AT5G59340 171 / 2e-52 WUSCHEL related homeobox 2 (.1) Potri.015G039100 [exp] 106 / 3e-27 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.012G047700 [exp] 104 / 2e-26 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.001G237900 [exp] 101 / 3e-26 AT5G59340 166 / 2e-50 WUSCHEL related homeobox 2 (.1) Potri.010G192100 [exp] 98 / 1e-25 AT3G11260 159 / 1e-49 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.008G065400 [exp] 95 / 2e-24 AT3G11260 176 / 9e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.007G012100 [exp] 97 / 3e-24 AT2G17950 126 / 9e-35 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Potri.010G111400 [exp] 96 / 2e-23 AT3G18010 109 / 2e-27 WUSCHEL related homeobox 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024808 [exp] 195 / 3e-62 AT1G46480 195 / 7e-62 WUSCHEL related homeobox 4 (.1) Lus10018726 [exp] 123 / 1e-35 AT1G46480 121 / 8e-35 WUSCHEL related homeobox 4 (.1) Lus10040219 [exp] 110 / 1e-29 AT3G11260 179 / 4e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10018011 [exp] 107 / 4e-27 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10042007 [exp] 107 / 6e-27 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10028271 [exp] 101 / 3e-26 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10038480 [exp] 97 / 6e-25 AT2G28610 130 / 1e-37 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) Lus10016569 [exp] 97 / 5e-24 AT5G59340 121 / 6e-33 WUSCHEL related homeobox 2 (.1) Lus10040840 [exp] 93 / 9e-23 AT5G59340 110 / 7e-29 WUSCHEL related homeobox 2 (.1) Lus10023332 [exp] 88 / 3e-22 AT2G28610 109 / 9e-31 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.014G025300.1 pacid=42762556 polypeptide=Potri.014G025300.1.p locus=Potri.014G025300 ID=Potri.014G025300.1.v4.1 annot-version=v4.1 ATGGGAAGCATGAAGGTGCATCAGTTGGCACGTGGATTTTGGGAGCACGAACCCTCTCTTACGCTTGGTTGCAAGCGTTTACGCCCTCTTGCTCCCAAGC TGGCCAACACAGATCATAGTGTAACCTCTTTCGATCTCAAGAGCTTCATCAGACCCGATAGCGGTCCTAGAAAGCTTGCCTCCTCTGACGAGAAGAAAGA TTCCCCTCAGGGGGAAACGCACCCGGGAGGGACACGGTGGAACCCGACACAAGAGCAGATAGGGATACTAGAGATGTTGTATAGGGGAGGAATGAGAACT CCTAATGGGCAACAAATAGAAGATATCACAGCACAACTAAGCAGATACGGCAAGATTGAAGGGAAGAACGTTTTTTACTGGTTCCAAAACCACAAAGCCC GCGAGAGGCAAAAACAGAAGAGAAACAGCCTTGGTTTAAGCCATAGTCCTAGAACCCCATCTCCCATTACCATTATATCTTTGGATACTAGGGGAGAAGT GGAGAAAGATGAGGATAGTCCATACAAAAGAAAGTGTAGGAGCTGGTCATTTGAATGCTTTGAATTAGAAGAAAGCAGGTCATGTAAAGAGGAGGGAGAT AGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGAAGATGA
AA sequence Show only first row Show all	>Potri.014G025300.1 pacid=42762556 polypeptide=Potri.014G025300.1.p locus=Potri.014G025300 ID=Potri.014G025300.1.v4.1 annot-version=v4.1 MGSMKVHQLARGFWEHEPSLTLGCKRLRPLAPKLANTDHSVTSFDLKSFIRPDSGPRKLASSDEKKDSPQGETHPGGTRWNPTQEQIGILEMLYRGGMRT PNGQQIEDITAQLSRYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHSPRTPSPITIISLDTRGEVEKDEDSPYKRKCRSWSFECFELEESRSCKEEGD RTLELFPLHPEGR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Potri.014G025300 [exp]	0	1
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Potri.008G025600 [exp]	2.00	0.9341
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Potri.007G052600 [exp]	4.00	0.9222
AT3G17365			S-adenosyl-L-methionine-depend...		Potri.010G153200 [exp]	4.47	0.9063
AT2G36570			Leucine-rich repeat protein ki...		Potri.006G117200 [exp]	6.00	0.9329
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	7.34	0.9328
AT3G56810			unknown protein		Potri.006G026600 [exp]	7.74	0.9260
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.011G162000 [exp]	8.77	0.9258	Pt-FAH1.1
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	9.79	0.9305
AT2G41890			curculin-like (mannose-binding...		Potri.006G053700 [exp]	10.00	0.8784
AT5G62865			unknown protein		Potri.012G078300 [exp]	10.67	0.9072

Compare expression of checked genes

Potri.014G025300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.