Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49760 789 / 0 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT4G34110 686 / 0 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G23350 597 / 0 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G22760 521 / 4e-178 PAB3 poly(A) binding protein 3 (.1) AT1G71770 511 / 1e-173 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G34140 343 / 2e-112 PAB1 poly(A) binding protein 1 (.1) AT2G36660 339 / 5e-108 PAB7 poly(A) binding protein 7 (.1) AT3G16380 311 / 5e-98 PAB6 poly(A) binding protein 6 (.1) AT2G18510 122 / 5e-30 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G11650 108 / 4e-25 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124200 [exp] 1006 / 0 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.009G099300 [exp] 878 / 0 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.001G304000 [exp] 877 / 0 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.005G198500 [exp] 671 / 0 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.002G062700 [exp] 564 / 0 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.001G191500 [exp] 334 / 1e-106 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.007G028300 [exp] 126 / 2e-31 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G128100 [exp] 112 / 3e-26 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.005G125300 [exp] 108 / 2e-25 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010042 [exp] 884 / 0 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 742 / 0 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 725 / 0 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 714 / 0 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10014392 [exp] 402 / 7e-132 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10027733 [exp] 392 / 8e-128 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 386 / 1e-125 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10035556 [exp] 389 / 1e-121 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021396 [exp] 284 / 1e-87 AT1G49760 351 / 6e-114 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10019838 [exp] 137 / 5e-35 AT1G49760 192 / 3e-55 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF00658 [poplar] [flax] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Potri.014G025400.1 pacid=42763989 polypeptide=Potri.014G025400.1.p locus=Potri.014G025400 ID=Potri.014G025400.1.v4.1 annot-version=v4.1 ATGGCGCAGATTCAGTTGCATCAATCGGGGGCTTCGGTACCGGGACCCAACGGAGTGGCGGCGGGACCTGGAGCGATCCAGTTTGTGCCGACTTCGCTTT ATGTTGGTGATCTTGACTTCAACGTGACTGATTCTCAGCTTTACGACGTGTTTAATCAGGTCGGCCAGGTGGTTTCGGTTAGGGTTTGTAGGGATTTGAG TACCAGGCGATCTCTTGGCTATGGTTATGTTAACTATAGCAACCCTCAGGATGCTGCAAGGGCATTGGATGTCTTGAACTTTACTCCACTCAATAACAAG CCTATCAGGATCATGTATTCCCATCGGGACCCAAGTATTCGTAAGAGTGGCATGGCAAATATATTTATCAAGAACCTGGACAAGGGTATTGATCACAAAG CTTTACACGACACATTTTCTTCATTTGGCAATATTCTTTCTTGCAAAGTTGCTACTGATGCTTCTGGCCAGTCCAAAGGCTATGGTTTTGTACAATTTGA CAGCGAGGAGGCTGCACAAAATGCAATAGATAAATTAAATGGCATGTTGGTCAATGATAAACAAGTGTATGTTGGACACTTTCTTCGCAAACAGGACAGA GATGGTGCTCTATATAGCATAAAATTCAACAATGTATTTGTGAAAAATCTGGCTGAATCCACAACAGATGAAGAGTTGAAGAATATTTTTGCTGAACATG GAGCAATTACTAGTGCTGTGGTGATGAGGGATGCTGATGGTAAATCAAAATGTTTTGGATTTGTTAATTTTGAAAGTGCAGATGATGCTGCCAAAGCTGT TGAGGCTCTTAATGGCAAGAAAATCGATGGTGAGGAGTGGTATGTTGGGAAAGCCCAGAAAAAGTCTGAAAGAGAGCTTGAACTGAAAGGGCGATTTGAG CAGAGTATGAAGGAGACTGTTGACAAATTTCAAGGCTTGAATTTGTATATCAAGAATCTAGATGATAGCATCAATGATGAAAAACTCAAGGAATTGTTCT CTGACTTTGGTGCTATTACTTCGTGCAAGGTCATGCGTGACCCTAGTGGTATTAGCAGAGGTTCTGGATTTGTTGCCTTCTCAACTCCTGAAGAAGCATC TCGAGCTCTTGCTGAGATGAATGGAAAAATGTTGATCAGCAAACCCCTGTATGTTGCCCTTGCTCAACGGAAGGAAGAGAGAAGAGCAAGACTTCAGGCA CAATTTTCTCAAATGAGGCCAGTTACCATGGCACCTTCAGTTGCTTCTCGTATGCCAATGTATCCTCCTGGTGCTCCAGGTATGGGACAACAATTTCTGT ATGGGCAAGGACCTCCAGCCATGATGCCTCCCCAGGCTGGATTTGGCTACCAACAGCAACTTGTCCCTGGAATGAGGCCTGGTGGTGCCCCAATGCCAAA TTTCTTTGTTCCTCTGGTTCAGCAGGGTCAGCAAGGCCAGCGACCTGGAGGGCGACGTGGGGGTGGTCCTGTTCAACAGACCCAGCAGCCAGTCCCTCTC ATGCAGCAACAGATGCTTCCGAGGGGACGCGTGTATCGTTACCCACCAGGTCGCAACATGCCAGATGTACCAATGCCAGGTGTTGCTGGAGGCATGCTTT CTGTTCCTTATGACATGGGCGGCATGCCAATACGTGATGCCGCACAACCCATGCCCATTACTGCTTTAGCTACTGCCCTGGCAAATGCAACACCTGAACA GCAGAGGACGATGCTGGGTGAAAGTCTATACCCCATAGTGGATCAGCTTGAGCATGATTCAGCAGCCAAGGTTACAGGCATGCTTCTGGAGATGGATCAA ACTGAGGTGTTGCACCTTCTTGAGTCACCAGAGGCTTTGAAGGCAAAAGTGGCAGAAGCTATGGAGGTCCTTAGGACTGTAGCTGCTCAGCAGCAGATCA ACAATCAAGCGGATCAGCTTGGGTCGCTGTCTCTGAATGACAATCTTGTCTCTTAA
AA sequence Show only first row Show all	>Potri.014G025400.1 pacid=42763989 polypeptide=Potri.014G025400.1.p locus=Potri.014G025400 ID=Potri.014G025400.1.v4.1 annot-version=v4.1 MAQIQLHQSGASVPGPNGVAAGPGAIQFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNK PIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDR DGALYSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAAKAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFE QSMKETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMLISKPLYVALAQRKEERRARLQA QFSQMRPVTMAPSVASRMPMYPPGAPGMGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGGGPVQQTQQPVPL MQQQMLPRGRVYRYPPGRNMPDVPMPGVAGGMLSVPYDMGGMPIRDAAQPMPITALATALANATPEQQRTMLGESLYPIVDQLEHDSAAKVTGMLLEMDQ TEVLHLLESPEALKAKVAEAMEVLRTVAAQQQINNQADQLGSLSLNDNLVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49760		PABP8, PAB8	poly(A) binding protein 8 (.1)...		Potri.014G025400 [exp]	0	1
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.011G050600 [exp]	27.76	0.6965
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.002G072900 [exp]	35.63	0.6923	SEU.1
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Potri.019G048100 [exp]	39.11	0.6423
AT3G14830			unknown protein		Potri.003G026500 [exp]	41.95	0.6520
AT3G22270			Topoisomerase II-associated pr...		Potri.016G020100 [exp]	42.21	0.6688
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.015G105300 [exp]	45.05	0.6510	Pt-ARF2.1
AT5G64550			loricrin-related (.1)		Potri.001G206600 [exp]	52.21	0.6538
AT3G08760		ATSIK	Protein kinase superfamily pro...		Potri.016G136400 [exp]	54.77	0.6253
AT1G56090			Tetratricopeptide repeat (TPR)...		Potri.005G097300 [exp]	68.41	0.6464
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.012G106100 [exp]	68.93	0.6590	Pt-ARF2.2

Compare expression of checked genes

Potri.014G025400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.