Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42830 575 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G07850 536 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G07870 501 / 3e-176 HXXXD-type acyl-transferase family protein (.1) AT5G07860 498 / 9e-175 HXXXD-type acyl-transferase family protein (.1) AT2G39980 321 / 4e-105 HXXXD-type acyl-transferase family protein (.1) AT5G01210 310 / 6e-101 HXXXD-type acyl-transferase family protein (.1) AT5G67150 305 / 2e-99 HXXXD-type acyl-transferase family protein (.1) AT3G50280 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) AT3G50270 260 / 4e-82 HXXXD-type acyl-transferase family protein (.1) AT3G50300 256 / 2e-80 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025550 [exp] 885 / 0 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 881 / 0 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 327 / 3e-108 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 327 / 1e-107 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 327 / 2e-107 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 322 / 4e-106 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 322 / 2e-105 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 320 / 2e-105 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 315 / 6e-103 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024809 [exp] 503 / 2e-176 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 301 / 1e-97 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 298 / 4e-96 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 255 / 1e-79 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 250 / 1e-78 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 248 / 4e-77 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 244 / 2e-75 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 194 / 1e-56 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 192 / 7e-56 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10027779 [exp] 172 / 9e-50 AT5G01210 350 / 7e-119 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.014G025500.1 pacid=42764341 polypeptide=Potri.014G025500.1.p locus=Potri.014G025500 ID=Potri.014G025500.1.v4.1 annot-version=v4.1 ATGAATCCTCTTACTGTCACGCCCATCTCAGAGTGCTTTATCAAGCCCAAACACATCGTAGAAGAAGCAAGACAACCTTATTATTTGGCACCATGGGATC TTGTTATGCTTTCTGTTCAATATATTCAAAAGGGGCTTCTCTTTGCCAAACCACCAAAAACAGAAAATCAACAGGGTTTCAAGATCATGGATTTCTTGGA AGATCTAAAGCAGTCCCTCTCTCTCACTCTCGTTCATTTCTACCCGCTAGCCGGACGCCTTGCAACATCGAAGAGTGAGAACCCGCCTTCCTATGTGGTC TTCGTGGACTGCAATAACAGTCCAGGAGCTAGATTTACCTATGCAACAGTTGACCTCACTGCATCAGATGTTCTTTCACCTACTTATGTGCCATTGGTTG TTCAGTCATTCTTCGACCATGATAGAGCCCTCAACCATGATGGTCACACCAAATCTTTGCTGACAATTCAAGTGACAGAGCTAATTGATGGCATCTTCAT CGGATGTTCCGTTAATCACAGTATCGTTGATGGATCCTCTTTCTGGCATTTCTTTAATATGTGGTCTGAAATCTTTCAAGGGAAAGGAGACGATGTCTCG ATATCGCGCCCGCCTGTTCTCAACCGCTGGTTTCCTGATGGTCATGGTCCAGCACTGAGTCTTCCTTTCACCCACCATGACCAATTCTTAAGCCCGTTTG AAGCACCTTTACTCAAGGAAAGGATGTTTCACTTCTCATCAGAATCTATTGCAAGACTCAAAGCAAAAGCCAACGCAGAGTCCAACACCAACAAGATTTC ATCTTTCCAGTCCCTGTCTGCTCTTGTTTGGAGATGCATAACACGCGCACGCAATCTACCTCATGATCAAGTAACCTGTTGCAGAATGGCTATCAATAAT CGTTCAAGATTGAATCCACCATTATCTCCTGACTACTTTGGAAACTCAATTCAGGCACTGAAAGCTGGGGTTTCAACCGTAGGTGAGTTGCTGGAGCAGA ATCTTGGATGGGCAGCATGGCAGTTACATCAAGCTGTGGTGAGCCACAGTGATGAAAAGGCAAGGGAGTTTCTCAACTTGTGGTTAAAGTCTCGGTTTAT TTACCAGATAGGCAAGTTGTTTGATCCCCATAGTGTGATGATGGGGAGCTCACCAAGATTCAACAAGTATGGGAATGAATTTGGACTGGGGAAGGCTTTG GCACTTCGCAGTGGATATGCACATAAGTTCAGCGGGAAAGCGTCAGCTTATCCTGGACATGAAGGTGGAGGAAGTATAGAGTTAGAGATTTGCCTCTCCC CTGATGAAATGTCCGCTTTAGAATCTGATAAGGAGTTCATGGATGTTGTCTCCCCATCTGACAAGGAGTTAATGAGTGGCTAG
AA sequence Show only first row Show all	>Potri.014G025500.1 pacid=42764341 polypeptide=Potri.014G025500.1.p locus=Potri.014G025500 ID=Potri.014G025500.1.v4.1 annot-version=v4.1 MNPLTVTPISECFIKPKHIVEEARQPYYLAPWDLVMLSVQYIQKGLLFAKPPKTENQQGFKIMDFLEDLKQSLSLTLVHFYPLAGRLATSKSENPPSYVV FVDCNNSPGARFTYATVDLTASDVLSPTYVPLVVQSFFDHDRALNHDGHTKSLLTIQVTELIDGIFIGCSVNHSIVDGSSFWHFFNMWSEIFQGKGDDVS ISRPPVLNRWFPDGHGPALSLPFTHHDQFLSPFEAPLLKERMFHFSSESIARLKAKANAESNTNKISSFQSLSALVWRCITRARNLPHDQVTCCRMAINN RSRLNPPLSPDYFGNSIQALKAGVSTVGELLEQNLGWAAWQLHQAVVSHSDEKAREFLNLWLKSRFIYQIGKLFDPHSVMMGSSPRFNKYGNEFGLGKAL ALRSGYAHKFSGKASAYPGHEGGGSIELEICLSPDEMSALESDKEFMDVVSPSDKELMSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42830			HXXXD-type acyl-transferase fa...		Potri.014G025500 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212500 [exp]	2.23	0.9608
					Potri.008G212400 [exp]	3.46	0.9559
AT1G12970		PIRL3	plant intracellular ras group-...		Potri.010G046500 [exp]	5.47	0.9335
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004500 [exp]	5.65	0.9343
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Potri.004G007500 [exp]	6.00	0.9356	Pt-WRKY6.1
					Potri.004G188300 [exp]	7.74	0.9288
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.014G146000 [exp]	9.89	0.8961
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.010G119100 [exp]	10.00	0.9218
AT4G19950			unknown protein		Potri.005G186200 [exp]	11.35	0.9423	ORF.5
AT2G45040			Matrixin family protein (.1)		Potri.001G157500 [exp]	11.95	0.9306	Pt-MMP.15

Compare expression of checked genes

Potri.014G025500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.